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Claude Skills by fmschulz
github.com/fmschulz34 skills0 installs3 views
- Ai Scientist EvaluatorScore finished AI-generated biology or bioinformatics work against its task and required artifacts. Use when auditing or ranking AI scientist submissions for task completion, scientific validity, and reproducibility.Votes: 0GitHub stars: 9
- Arxiv SearchSearch arXiv through its official API and write Markdown notes for arXiv IDs. Use for CS, math, physics, statistics, or quantitative-biology preprints, or to resolve arXiv IDs.Votes: 0GitHub stars: 9
- Beautiful Data VizShared design rules for every plot, figure, chart, dashboard or data visual (matplotlib, seaborn, ggplot2, Plotly, HTML/SVG). Greyscale first, color only to encode information, colorblind-safe, publication-ready export. Use when making, restyling or reviewing any chart or figure.Votes: 0GitHub stars: 9
- Bio AnnotationAnnotate proteins with functions, domains, and homology-based taxonomy. Use when assigning functional or taxonomic labels to proteins from genomes, contigs, or MAGs.Votes: 0GitHub stars: 9
- Bio Assembly QcAssemble isolate genomes or metagenomes and run QUAST/MetaQUAST with a restartable driver. Use when turning QC-passed reads into contigs and checking assembly contiguity.Votes: 0GitHub stars: 9
- Bio Binning QcBin metagenomic contigs with QuickBin and assess MAG quality with CheckM2, GUNC, EukCC, and GTDB-Tk. Use when binning an assembly or scoring bin completeness and contamination.Votes: 0GitHub stars: 9
- Bio Fasta Database CuratorCurate and validate FASTA or FAA databases. Use when standardizing headers, merging or deduplicating references, converting GenBank, or preparing BLAST, MMseqs2, or HMM inputs.Votes: 0GitHub stars: 9
- Bio Foundation HousekeepingAdd LinkML/Pydantic metadata validation, Parquet tables, and a DuckDB catalog to a bioinformatics project. Use when records need schema checks or a queryable catalog.Votes: 0GitHub stars: 9
- Bio Gene CallingPredict genes and count tRNA and rRNA genes in assemblies. Use when calling CDS in prokaryotic, viral, or eukaryotic assemblies, or when an ncRNA census is needed before annotation.Votes: 0GitHub stars: 9
- Bio Interdomain HgtDetect and polarize interdomain horizontal gene transfer with reciprocal hits, genomic context, and gene trees. Use for virus-host gene exchange, endogenous viral elements, or donor direction.Votes: 0GitHub stars: 9
- Bio LogicAssess a scientific claim, study design, or interpretation against its evidence. Use when testing causal reasoning, finding bias, weighing alternative explanations, or revising hypotheses.Votes: 0GitHub stars: 9
- Bio PhylogenomicsBuild marker-gene alignments and ML trees and find closest relatives. Use when inferring phylogenies, placing genomes, choosing substitution models, or checking tree support.Votes: 0GitHub stars: 9
- Bio Prefect Dask NextflowChoose and scaffold Prefect+Dask or Nextflow pipelines. Use when designing a local, distributed, or Slurm-backed bioinformatics workflow.Votes: 0GitHub stars: 9
- Bio Protein Clustering PangenomeCluster proteins into orthogroups and build pangenome matrices. Use when comparing gene-family presence, copy number, or core and accessory content across genomes.Votes: 0GitHub stars: 9
- Bio Reads Qc MappingQC, trim, and map short or long reads with a restartable driver. Use when processing raw FASTQ, removing adapters or contaminants, or computing mapping and coverage statistics.Votes: 0GitHub stars: 9
- Bio Stats Ml ReportingRun statistics or machine learning on biological results and write a validated report. Use when testing hypotheses, training classifiers or rolling up discovery evidence.Votes: 0GitHub stars: 9
- Bio Structure AnnotationPredict protein or complex structures and find structural homologs. Use when sequence search gives weak or no hits, or when a fold, complex model, or prediction confidence is needed.Votes: 0GitHub stars: 9
- Bio ViromicsDetect, QC, and classify viral contigs with geNomad, CheckV, vConTACT3, and GVClass. Use when finding viruses in assemblies, grading viral genomes, or assigning phage or giant-virus taxonomy.Votes: 0GitHub stars: 9
- Bio Workflow Methods DocwriterGenerate reproducible Methods from Nextflow, Snakemake, or CWL run artifacts. Use when documenting exact commands, versions, parameters, QC gates, provenance, and outputs.Votes: 0GitHub stars: 9
- Bioinformatics ProjectStructure reproducible bioinformatics projects with canonical layouts, restartable drivers, pinned environments, provenance, and lab notebooks. Use when starting or reorganizing a genomics project or making a sequencing analysis rerunnable.Votes: 0GitHub stars: 9
- Biorxiv SearchScan bioRxiv by date range, category, author, or DOI through its official API, with local keyword filtering. Use for recent biology preprints, bioRxiv DOI lookups, or author shortlists.Votes: 0GitHub stars: 9
- Crossref LookupQuery Crossref to validate DOIs, match titles to DOIs, fetch citation metadata, and audit bibliographies. Use when resolving references or cleaning citation records.Votes: 0GitHub stars: 9
- Csag ExtractionExtract a Conditional Scientific Argumentation Graph and grounded Q&A from a manuscript. Use when representing assertions, contexts, evidence links, and inference steps in machine-readable form.Votes: 0GitHub stars: 9
- Exploratory Data AnalysisInspect a scientific data file and report its structure and quality. Use when triaging an unknown table, array, sequence or image file.Votes: 0GitHub stars: 9
- Manuscript Review CouncilJournal-style manuscript peer review with specialist reviewer reports and an editor decision. Use when judging publication readiness or whether a revision or author response resolves scientific objections.Votes: 0GitHub stars: 9
- NotebooksAuthor, run and convert marimo or Jupyter notebooks. Use when delivering an analysis notebook executed end to end with figures embedded.Votes: 0GitHub stars: 9
- Pdf To MdConvert PDFs and office documents to clean Markdown, with structured bundles for scientific papers. Use when extracting article structure, preparing a manuscript for analysis, or creating CSAG input.Votes: 0GitHub stars: 9
- Plotly Dashboard SkillBuild Plotly Dash apps with one shared figure template and fast callbacks. Use when data needs an interactive multi-view dashboard.Votes: 0GitHub stars: 9
- Polars DovmedRun structured full-text searches of PMC Open Access and bioRxiv with polars-dovmed. Use for reproducible literature searches through the hosted API or local parquet corpora.Votes: 0GitHub stars: 9
- Proposal ReviewReview an AI/ML, computational-biology, or bioscience research proposal for a funding decision. Use when scoring a grant or funding application against sponsor criteria, feasibility, budget, and risk.Votes: 0GitHub stars: 9
- Public Db LookupFetch compact JSON records from UniProt, NCBI, MGnify, InterPro, AlphaFold DB, STRING, or ENA. Use when looking up an accession, taxon, entry, or structure in a public database.Votes: 0GitHub stars: 9
- Scientific Impact AssessmentAssess research reach with OpenAlex citations, optional Altmetric data, and journal context. Use when comparing papers, journals, or literature shortlists by influence.Votes: 0GitHub stars: 9
- Scientific WritingDraft or revise scientific prose without changing its claims. Use for manuscript sections, proposal narratives, rebuttals, response letters, or a sentence-level clarity review.Votes: 0GitHub stars: 9
- Tracking Taxonomy UpdatesTrack NCBI, GTDB, ICTV, and eukaryotic taxonomy releases, and route genomes, bins, or contigs to domain classifiers. Use when comparing releases, resolving renamed taxa, or assigning taxonomy.Votes: 0GitHub stars: 9