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Claude Skills by gabrielmoreira
github.com/gabrielmoreira4,240 skills39 installs5,281 views
- Clickhouse System QueriesQuery ClickHouse system tables to inspect query logs, monitor cluster health, check replication status, and analyze slow queries. Use when the user mentions "system tables", "query_log", "ClickHouse monitoring", "cluster status", "slow queries", or asks to diagnose ClickHouse operational issues.Votes: 0GitHub stars: 19
- Arboreto Grn InferenceGRN inference from expression via GRNBoost2 (gradient boosting) or GENIE3 (Random Forest). Load matrix, filter by TFs, infer TF-target-importance links, save network. Dask-parallelized to single-cell scale. Core SCENIC component.Votes: 0GitHub stars: 19
- Cellchat Cell CommunicationInfer and visualize intercellular communication from scRNA-seq with CellChat (R). Build CellChat from Seurat/counts → subset CellChatDB ligand-receptor pairs → over-expressed genes per group → communication probabilities → pathway signaling → network centrality (senders/receivers/influencers) → chord/heatmap/bubble plots → cross-condition compare. Human, mouse. Use liana for pure-Python.Votes: 0GitHub stars: 19
- Cobrapy Metabolic ModelingConstraint-based (COBRA) analysis of genome-scale metabolic models: FBA, FVA, knockouts, flux sampling, production envelopes, gapfilling, media optimization. Use for strain design, essential gene ID, flux analysis. For kinetic modeling use tellurium; for visualization use Escher.Votes: 0GitHub stars: 19
- Homer Motif AnalysisDe novo and known TF motif enrichment in ChIP-seq/ATAC-seq peaks via HOMER. findMotifsGenome.pl finds over-represented patterns vs background; annotatePeaks.pl assigns context (TSS distance, gene, repeat). Use after MACS3 to identify enriched TFs, annotate peaks with nearest genes, and validate ChIP-seq via the target motif.Votes: 0GitHub stars: 19
- Kegg Pathway AnalysisGuide to KEGG pathway enrichment for DEG results. Covers ORA vs GSEA, mandatory directionality splitting, KEGG organism codes, API failure handling with offline fallbacks, cross-condition comparisons, and answer-first reporting. Consult when running enrichment with clusterProfiler or gseapy.Votes: 0GitHub stars: 19
- Macs3 Peak CallingPoisson-model peak caller for ChIP-seq/ATAC-seq BAMs. MACS3 callpeak finds enriched regions (TF sites or histone marks) vs input/IgG; outputs BED narrowPeak/broadPeak for motif analysis, annotation, and differential binding. Use narrow peaks for TF ChIP-seq and ATAC-seq; broad for H3K27me3, H3K9me3, and other broad marks.Votes: 0GitHub stars: 19
- Matchms Spectral MatchingMS spectral matching and metabolite ID with matchms. Import spectra (mzML, MGF, MSP, JSON), filter/normalize peaks, score similarity (cosine, modified cosine, fingerprint), build reproducible pipelines, identify unknowns vs spectral libraries. Use pyopenms for full LC-MS/MS proteomics.Votes: 0GitHub stars: 19
- Maxquant ProteomicsMaxQuant + Perseus proteomics pipeline: run MaxQuant for LFQ and SILAC; parse proteinGroups.txt in Python; filter contaminants/decoys; log2 + median-normalize; impute MNAR; t-test with FDR; volcano plot; GO/pathway enrichment. Use Proteome Discoverer for Thermo-native processing; FragPipe/MSFragger for GPU-accelerated DB search.Votes: 0GitHub stars: 19
- Mofaplus Multi OmicsMulti-Omics Factor Analysis v2 (MOFA+) with mofapy2. Jointly decompose omics layers (scRNA, ATAC, proteomics, methylation) into latent factors capturing major variation. Multi-group designs. AnnData views → MOFA object → train → variance explained → correlate factors with metadata → visualize/cluster → enrich top loadings.Votes: 0GitHub stars: 19
- Muon Multiomics SinglecellMulti-modal single-cell analysis with muon/MuData. Joint RNA+ATAC (10x Multiome), CITE-seq (RNA+protein), other multi-omics. MuData holds per-modality AnnData with shared obs. WNN joint embedding, per-modality preprocessing, MOFA factor analysis. Use scanpy-scrna-seq for single-modality RNA; use muon when combining 2+ omics from the same cells.Votes: 0GitHub stars: 19
- Pyopenms Mass SpectrometryMS data processing with PyOpenMS for LC-MS/MS proteomics and metabolomics — mzML/mzXML I/O, signal processing (smoothing, peak picking, centroiding), feature detection/linking, peptide/protein ID with FDR, untargeted metabolomics. Use matchms for simple spectral matching.Votes: 0GitHub stars: 19
- Scikit Survival AnalysisTime-to-event modeling with scikit-survival: Cox PH (elastic net), Random Survival Forests, Boosting, SVMs for censored data. C-index, Brier, time-dependent AUC; Kaplan-Meier, Nelson-Aalen, competing risks. Pipeline/GridSearchCV compatible. Use statsmodels for frequentist, pymc for Bayesian, lifelines for parametric.Votes: 0GitHub stars: 19
- Latex FmtReformat LaTeX papers for a specified venue, year, track, and submission stage. Apply official templates and check layout, bibliography, page limits, and anonymization while preserving scientific content.Votes: 0GitHub stars: 19
- Latex PolishEdit academic prose in LaTeX manuscripts or supplied text at light, moderate, or strict intensity. Improve grammar and clarity while preserving scientific claims, uncertainty, numbers, citations, and LaTeX structure.Votes: 0GitHub stars: 19
- Latex RescueDiagnose and repair LaTeX build failures in local projects or supplied logs. Make minimal source fixes, preserve scientific content and reference keys, and report actual build evidence and unresolved errors.Votes: 0GitHub stars: 19
- Paper ReadSummarize and critically analyze academic papers supplied as PDFs, text, arXiv links, or journal URLs. Ground claims in the inspected version and source locations; support focused questions, deeper appraisal, and cross-paper comparison.Votes: 0GitHub stars: 19
- Pdf2texReconstruct editable LaTeX from PDF content using page-aware extraction and visual comparison. Preserve source evidence, flag uncertain math/tables/citations, and distinguish text extraction, OCR, reconstruction, and verified compilation.Votes: 0GitHub stars: 19
- Nfcore Rnastructurome WrapperWrapper skill for running nf-core/rnastructurome — chemical-probing RNA structure analysis (SHAPE/DMS, RT-stop/MaP readout) from FASTQ to per-base reactivity, secondary-structure predictions, and 2D diagrams.Votes: 0GitHub stars: 19
- Roam Agent GuidanceReview and maintain the technical instructions Roam gives coding agents: shipped skills, tool descriptions, preset guidance and generated instruction blocks. Use for stale, unreachable or misleading usage guidance, not product persuasion, general repo exploration or runtime defect repair.Votes: 0GitHub stars: 19
- Roam Evidence HardeningInvestigate and harden Roam detectors, CLI/MCP result contracts, and evidence consumers when dogfooding or correcting incomplete, misleading, or inconsistent analysis. Use for a requested hardening pass, a suspected evidence defect, or unresolved Roam result/delivery state, not routine feature edits, product copy, or release approval.Votes: 0GitHub stars: 19
- Roam Lesson MaintenanceTurn a reproduced or recurring Roam failure into a durable correction, regression control or narrowly scoped project skill, and reconcile conflicting lessons. Use when asked to preserve and apply lessons, not for routine note-taking, an unconfirmed allegation or every successful edit.Votes: 0GitHub stars: 19
- Roam Measurement DesignDesign or interpret a comparison of Roam performance, detector accuracy, retrieval or workflow value. Use to choose a fair measurement and bound its resulting claim, not for ordinary regression tests, product copy, release approval or a new benchmark platform.Votes: 0GitHub stars: 19
- Roam Milestone PlanningDefine or revise a Roam product milestone and its engineering, adoption and offer-readiness sequence. Use for a requested goal or priority guide across those areas, not a single implementation task, routine status report, copy edit or publication operation.Votes: 0GitHub stars: 19
- Roam Product WritingDraft, review, and improve Roam positioning and product copy across its website, README, offers, setup explanations, package descriptions, and metadata. Make its agent-first mechanical capabilities clear, useful, and persuasive without narrowing the product or overstating evidence. Not for unrelated products or CLI output schemas.Votes: 0GitHub stars: 19
- Roam Release ReadinessQualify a Roam commit or accumulated batch for package, website, or server publication; reconcile source, tests, review, CI and deployed identities, and identify the next authorized release step. Use for Roam release/deployment or synchronization readiness requests, not ordinary local edits, copywriting, or detector diagnosis.Votes: 0GitHub stars: 19
- Prompt OptimizerOptimize a vague subagent brief into a structured Agent task brief carrying falsifier, invariant, source-citation rule, and concrete-noun anchors. Invoke before Agent tool dispatch (Explore / general-purpose / Plan), before drafting research-wave specs, before writing HANDOVER memos, before composing /loop self-prompts. Source: agi-in-md Comparator-Aware Prompt Diagnostics paper + 81-prism Twinks catalog.Votes: 0GitHub stars: 19
- Roam Agent GuidanceReview and maintain the technical instructions Roam gives coding agents: shipped skills, tool descriptions, preset guidance and generated instruction blocks. Use for stale, unreachable or misleading usage guidance, not product persuasion, general repo exploration or runtime defect repair.Votes: 0GitHub stars: 19
- Roam Evidence HardeningInvestigate and harden Roam detectors, CLI/MCP result contracts, and evidence consumers when dogfooding or correcting incomplete, misleading, or inconsistent analysis. Use for a requested hardening pass, a suspected evidence defect, or unresolved Roam result/delivery state, not routine feature edits, product copy, or release approval.Votes: 0GitHub stars: 19
- Roam Lesson MaintenanceTurn a reproduced or recurring Roam failure into a durable correction, regression control or narrowly scoped project skill, and reconcile conflicting lessons. Use when asked to preserve and apply lessons, not for routine note-taking, an unconfirmed allegation or every successful edit.Votes: 0GitHub stars: 19
- Roam Measurement DesignDesign or interpret a comparison of Roam performance, detector accuracy, retrieval or workflow value. Use to choose a fair measurement and bound its resulting claim, not for ordinary regression tests, product copy, release approval or a new benchmark platform.Votes: 0GitHub stars: 19
- Roam Milestone PlanningDefine or revise a Roam product milestone and its engineering, adoption and offer-readiness sequence. Use for a requested goal or priority guide across those areas, not a single implementation task, routine status report, copy edit or publication operation.Votes: 0GitHub stars: 19
- Roam Product WritingDraft, review, and improve Roam positioning and product copy across its website, README, offers, setup explanations, package descriptions, and metadata. Make its agent-first mechanical capabilities clear, useful, and persuasive without narrowing the product or overstating evidence. Not for unrelated products or CLI output schemas.Votes: 0GitHub stars: 19
- Roam Release ReadinessQualify a Roam commit or accumulated batch for package, website, or server publication; reconcile source, tests, review, CI and deployed identities, and identify the next authorized release step. Use for Roam release/deployment or synchronization readiness requests, not ordinary local edits, copywriting, or detector diagnosis.Votes: 0GitHub stars: 19
- Ce PlanCreate structured plans for multi-step work, including software and non-software tasks. Use when asked to plan, break down implementation, plan from requirements, or deepen an existing plan; prefer ce-brainstorm for exploratory framing.Votes: 0GitHub stars: 19
- Template<What it does, one line>. Trigger phrases: <phrases>.Votes: 0GitHub stars: 18
- AirtableList Airtable bases, read table records, and add records. Trigger phrases: airtable, my base, add a record, spreadsheet.Votes: 0GitHub stars: 18
- AlphavantageStock quotes and daily price history. Trigger phrases: stock quote, alphavantage, stock price.Votes: 0GitHub stars: 18
- AmadeusSearch travel with Amadeus: flight offers and prices, airport autocomplete, hotel offers, cheapest dates. Trigger phrases: amadeus, flight search, flight prices, hotel search.Votes: 0GitHub stars: 18
- AnthropicCheck Anthropic API access and list available Claude models. Read-only. Trigger phrases: anthropic, claude models, anthropic api.Votes: 0GitHub stars: 18
- ApolloSearch B2B contacts with Apollo.io: find people by title and company, enrich contacts and companies. Trigger phrases: apollo, find prospects, enrich contact.Votes: 0GitHub stars: 18
- AqaraRead and control Aqara smart home devices: plugs, switches, lights, AC, locks, curtains, scenes. Trigger phrases: aqara, aqara hub, aqara lock, aqara curtain.Votes: 0GitHub stars: 18
- AsanaRead and manage Asana tasks: my tasks, task details, create tasks. Trigger phrases: asana, my tasks, task list, todo.Votes: 0GitHub stars: 18
- AshbySearch Ashby public job boards (no key needed) and read/write the Ashby ATS: candidates, jobs, applications. Trigger phrases: ashby, job board, candidates, hiring, job search.Votes: 0GitHub stars: 18
- AttioRead and write Attio: list objects, query records, upsert records, add notes and tasks. Trigger phrases: attio, crm.Votes: 0GitHub stars: 18
- BeatovenBeatoven.ai royalty-free music generation: compose tracks, poll tasks, download audio, fetch individual stems. Trigger phrases: beatoven, compose music, generate a track, royalty free music, background music.Votes: 0GitHub stars: 18
- BeehiivRead and write beehiiv: list publications, subscribers, and posts; add subscribers. Trigger phrases: beehiiv, newsletter subscribers.Votes: 0GitHub stars: 18
- Black Forest LabsBlack Forest Labs FLUX image generation: flux-2-pro and flux-2-flex text-to-image with async polling. Trigger phrases: black forest labs, BFL, flux image, flux-2-pro, flux 2 generate.Votes: 0GitHub stars: 18
- BlueskyRead and write Bluesky: view profiles and timelines, search posts, post, follow, read notifications. Trigger phrases: bluesky, atproto.Votes: 0GitHub stars: 18
- Brave SearchIndependent web search from Brave's own index. Trigger phrases: brave, brave search, web search.Votes: 0GitHub stars: 18