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Claude Skills by jackspace

github.com/jackspace

149 skillsA× 132B× 15D× 1F× 15 installs438 views

Scientific Pkg FlowioAParse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.datapythongoVotes: 0GitHub stars: 16
Scientific Pkg GenimlAThis skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.datapythongoVotes: 0GitHub stars: 16
Scientific Pkg HistolabADigital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting tissue regions, segmenting tissue masks, or preparing datasets for computational pathology deep learning pipelines. Applies to WSI formats (SVS, TIFF, NDPI), tile-based analysis, and histological image preprocessing workflows.datapythongoVotes: 0GitHub stars: 16
Scientific Pkg HypogenicAAutomated hypothesis generation and testing using large language models. Use this skill when generating scientific hypotheses from datasets, combining literature insights with empirical data, testing hypotheses against observational data, or conducting systematic hypothesis exploration for research discovery in domains like deception detection, AI content detection, mental health analysis, or other empirical research tasks.ai-agentspythongoVotes: 0GitHub stars: 16
Scientific Pkg LamindbAThis skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, disea...databasespythongoVotes: 0GitHub stars: 16
Scientific Pkg MarkitdownAConvert various file formats (PDF, Office documents, images, audio, web content, structured data) to Markdown optimized for LLM processing. Use when converting documents to markdown, extracting text from PDFs/Office files, transcribing audio, performing OCR on images, extracting YouTube transcripts, or processing batches of files. Supports 20+ formats including DOCX, XLSX, PPTX, PDF, HTML, EPUB, CSV, JSON, images with OCR, and audio with transcription.toolspythonbashVotes: 0GitHub stars: 16
Scientific Pkg MatchmsAMass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.datapythongoVotes: 0GitHub stars: 16
Scientific Pkg NetworkxAComprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.datapythongoVotes: 0GitHub stars: 16
Scientific Pkg PathmlAComputational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this skill when working with histopathology slides, H&E stained images, multiplex immunofluorescence (CODEX, Vectra), spatial proteomics, nucleus detection/segmentation, tissue graph construction, or training ML models on pathology data. Supports 160+ slide formats including Aperio SVS, NDPI, DICOM, OME-TIFF for digital pathology workflows.datapythonbashVotes: 0GitHub stars: 16
Scientific Pkg PolarsAFast DataFrame library (Apache Arrow). Select, filter, group_by, joins, lazy evaluation, CSV/Parquet I/O, expression API, for high-performance data analysis workflows.datapythonrustVotes: 0GitHub stars: 16
Scientific Pkg Pydeseq2ADifferential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.datapythongoVotes: 0GitHub stars: 16
Scientific Pkg PydicomAPython library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying medical imaging data in DICOM format, extracting pixel data from medical images (CT, MRI, X-ray, ultrasound), anonymizing DICOM files, working with DICOM metadata and tags, converting DICOM images to other formats, handling compressed DICOM data, or processing medical imaging datasets. Applies to tasks involving medical image analysis, PACS systems, ...datapythonrustVotes: 0GitHub stars: 16
Scientific Pkg PyhealthAComprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare applications (RETAIN, SafeDrug, Transformer, GNN).ai-agentspythonrustVotes: 0GitHub stars: 16
Scientific Pkg PylabrobotALaboratory automation toolkit for controlling liquid handlers, plate readers, pumps, heater shakers, incubators, centrifuges, and analytical equipment. Use this skill when automating laboratory workflows, programming liquid handling robots (Hamilton STAR, Opentrons OT-2, Tecan EVO), integrating lab equipment, managing deck layouts and resources (plates, tips, containers), reading plates, or creating reproducible laboratory protocols. Applicable for both simulated protocols and physical hardwa...developmentpythonrailsVotes: 0GitHub stars: 16
Scientific Pkg PymooAMulti-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.datapythongoVotes: 0GitHub stars: 16
Scientific Pkg PyopenmsAPython interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal processing, feature detection, peptide identification, and quantitative analysis. Apply when working with mass spectrometry data, analyzing proteomics experiments, or processing metabolomics datasets.datapythongoVotes: 0GitHub stars: 16
Scientific Pkg PysamAGenomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.datapythonperformanceVotes: 0GitHub stars: 16
Scientific Pkg ReportlabAPDF generation toolkit. Create invoices, reports, certificates, forms, charts, tables, barcodes, QR codes, Canvas/Platypus APIs, for professional document automation.documentationpythongoVotes: 0GitHub stars: 16
Scientific Pkg Scikit BioABiological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.datapythongoVotes: 0GitHub stars: 16
Scientific Pkg SeabornAStatistical visualization. Scatter, box, violin, heatmaps, pair plots, regression, correlation matrices, KDE, faceted plots, for exploratory analysis and publication figures.data-aipythongoVotes: 0GitHub stars: 16
Scientific Pkg ShapAModel interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (waterfall, beeswarm, bar, scatter, force, heatmap), debugging models, analyzing model bias or fairness, comparing models, or implementing explainable AI. Works with tree-based models (XGBoost, LightGBM, Random Forest), deep learning (TensorFlow, PyTorch), linear models, and any black-box mo...datapythongoVotes: 0GitHub stars: 16
Scientific Pkg Stable Baselines3AUse this skill for reinforcement learning tasks including training RL agents (PPO, SAC, DQN, TD3, DDPG, A2C, etc.), creating custom Gym environments, implementing callbacks for monitoring and control, using vectorized environments for parallel training, and integrating with deep RL workflows. This skill should be used when users request RL algorithm implementation, agent training, environment design, or RL experimentation.ai-agentspythongoVotes: 0GitHub stars: 16
Scientific Pkg TooluniverseAUse this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery. This skill provides access to 600+ scientific tools including machine learning models, datasets, APIs, and analysis packages. Use when searching for scientific tools, executing computational biology workflows, composing multi-step research pipelines, accessing databases like OpenTargets/PubChem/UniProt/PDB/ChEMBL, perfor...toolspythongoVotes: 0GitHub stars: 16
Scientific Pkg Zarr PythonAChunked N-D arrays for cloud storage. Compressed arrays, parallel I/O, S3/GCS integration, NumPy/Dask/Xarray compatible, for large-scale scientific computing pipelines.datapythongoVotes: 0GitHub stars: 16
Scientific Thinking Exploratory Data AnalysisAAnalyze datasets to discover patterns, anomalies, and relationships. Use when exploring data files, generating statistical summaries, checking data quality, or creating visualizations. Supports CSV, Excel, JSON, Parquet, and more.datapythongoVotes: 0GitHub stars: 16
Scientific Thinking Literature ReviewAConduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).researchpythongoVotes: 0GitHub stars: 16
Scientific Thinking Statistical AnalysisAStatistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks, APA reporting, for academic research.data-aipythongoVotes: 0GitHub stars: 16
Session Timeout HandlerABuild timeout-resistant Claude Code workflows with chunking strategies, checkpoint patterns, progress tracking, and resume mechanisms to handle 2-minute tool timeouts and ensure reliable completion of long-running operations.toolsgobashVotes: 0GitHub stars: 16
Skill HarvesterAMeta-skill for extracting and creating reusable Claude Code skills from past work sessions. Analyzes git history, code patterns, workflows, and documentation to identify harvestable skills, then generates comprehensive skill definitions with best practices, examples, and structured templates.developmentpythongoVotes: 0GitHub stars: 16
Skills Collection ManagerAComprehensive toolkit for managing large Claude Code skill collections including bulk downloading from GitHub, organizing into categories, detecting and removing duplicates, consolidating skills, and maintaining clean skill repositories with 100+ skills.developmentjavascripttypescriptVotes: 0GitHub stars: 16
Skills ConsolidatorAExpert skill for merging, organizing, and maintaining large collections of Claude Code skills with intelligent conflict resolution and structure optimization.developmentpythongoVotes: 0GitHub stars: 16
Skills Duplicate DetectorAExpert skill for identifying duplicate, similar, and overlapping Claude Code skills across your collection using intelligent comparison algorithms.developmentjavascriptpythonVotes: 0GitHub stars: 16
Stable Diffusion HelperAExpert guidance for Stable Diffusion image generation, optimization, and troubleshooting.ai-agentsgobashVotes: 0GitHub stars: 16
Sveltia CmsBComplete Sveltia CMS skill for lightweight, Git-backed content management. Sveltia is the modern successor to Decap/Netlify CMS with 5x smaller bundle (300 KB), faster GraphQL-based performance, and solves 260+ predecessor issues. Use this skill when setting up Git-based CMS for static sites (Hugo, Jekyll, 11ty, Gatsby, Astro, SvelteKit, Next.js), blogs, documentation sites, marketing sites, or migrating from Decap/Netlify CMS. Framework-agnostic with first-class i18n support and mobile-frie...developmentjavascripttypescriptVotes: 0GitHub stars: 16
Tailwind V4 ShadcnAProduction-tested setup for Tailwind CSS v4 with shadcn/ui, Vite, and React. Use when: initializing React projects with Tailwind v4, setting up shadcn/ui, implementing dark mode, debugging CSS variable issues, fixing theme switching, migrating from Tailwind v3, or encountering color/theming problems. Covers: @theme inline pattern, CSS variable architecture, dark mode with ThemeProvider, component composition, vite.config setup, common v4 gotchas, and production-tested patterns. Keywords: T...developmenttypescriptgoVotes: 0GitHub stars: 16
Tanstack QueryAThis skill provides comprehensive knowledge for TanStack Query v5 (React Query) server state management in React applications. It should be used when setting up data fetching with useQuery, implementing mutations with useMutation, configuring QueryClient, managing caching strategies, migrating from v4 to v5, implementing optimistic updates, using infinite queries, or encountering query/mutation errors. Use when: initializing TanStack Query in React projects, configuring QueryClient settings,...developmentjavascripttypescriptVotes: 0GitHub stars: 16
Tdd ReferenceAOn-demand TDD guideline access without loading full documentation into context. Provides targeted guidance for RED-GREEN-REFACTOR phases, refactoring decisions, and test quality patterns.developmenttypescriptgoVotes: 0GitHub stars: 16
Terraform Iac HelperAExpert helper for Terraform and infrastructure-as-code best practicesdevelopmentterraformbackendVotes: 0GitHub stars: 16
Testing BuilderAAutomatically generates comprehensive test suites (unit, integration, E2E) based on code and past testing patterns. Use when user says "write tests", "test this", "add coverage", or after fixing bugs to create regression tests. Eliminates testing friction for ADHD users.developmentjavascripttypescriptVotes: 0GitHub stars: 16
Thesys Generative UiAProduction-ready skill for integrating TheSys C1 Generative UI API into React applications. This skill should be used when building AI-powered interfaces that stream interactive components (forms, charts, tables) instead of plain text responses. Covers complete integration patterns for Vite+React, Next.js, and Cloudflare Workers with OpenAI, Anthropic Claude, and Cloudflare Workers AI. Includes tool calling with Zod schemas, theming, thread management, and production deployment. Prevents 12+ ...developmenttypescriptpythonVotes: 0GitHub stars: 16
Timeout PreventionAPrevent request timeouts in Claude Code sessions by chunking long operations, implementing progress checkpoints, using background processes, and optimizing tool usage patterns. Use when performing bulk operations, processing large datasets, running long-running commands, downloading multiple files, or executing tasks that exceed 2-minute timeout limits. Implements strategies like task decomposition, incremental processing, parallel execution, checkpoint-resume patterns, and efficient resource...toolsgobashVotes: 0GitHub stars: 16
TinacmsBComplete TinaCMS skill for building content-heavy sites with Git-backed CMS. Use this skill when setting up blogs, documentation sites, or marketing sites that require visual editing and content management for non-technical users. Supports Next.js (App Router + Pages Router), Vite + React, Astro, and framework-agnostic setups. Prevents 9+ common errors including ESbuild compilation issues, module resolution problems, schema configuration errors, Docker binding issues, and deployment problems....developmentjavascripttypescriptVotes: 0GitHub stars: 16
Typescript McpAUse this skill when building MCP (Model Context Protocol) servers with TypeScript on Cloudflare Workers. This skill provides production-tested patterns for implementing tools, resources, and prompts using the official @modelcontextprotocol/sdk. It prevents 10+ common errors including export syntax issues, schema validation failures, memory leaks from unclosed transports, CORS misconfigurations, and authentication vulnerabilities. This skill should be used when developers need stateless MCP se...developmenttypescriptpythonVotes: 0GitHub stars: 16
Vercel BlobAThis skill provides comprehensive knowledge for integrating Vercel Blob object storage into Vercel applications. It should be used when setting up file uploads, managing images and documents, implementing CDN-delivered assets, or handling large files in Next.js serverless and edge functions. Use this skill when: - Setting up file uploads for Next.js applications (images, PDFs, videos) - Implementing client-side uploads with presigned URLs - Managing user-generated content (avatars, attachmen...developmenttypescriptbashVotes: 0GitHub stars: 16
Vercel KvAThis skill provides comprehensive knowledge for integrating Vercel KV (Redis-compatible key-value storage powered by Upstash) into Vercel applications. It should be used when setting up Vercel KV for Next.js applications, implementing caching patterns, managing sessions, or handling rate limiting in edge and serverless functions. Use this skill when: - Setting up Vercel KV for Next.js applications - Implementing caching strategies (page cache, API cache, data cache) - Managing user sessions ...toolstypescriptgoVotes: 0GitHub stars: 16
Windows ExpertAExpert guidance for Windows, PowerShell, WSL interop, and cross-platform developmenttoolsshellbashVotes: 0GitHub stars: 16
Wordpress Plugin CoreAThis skill provides comprehensive knowledge for WordPress plugin development, covering core patterns, security best practices, database interactions, hooks/filters, Settings API, custom post types, REST API, and AJAX. This skill should be used when creating WordPress plugins, troubleshooting security issues, implementing custom post types/taxonomies, building admin interfaces, or working with the WordPress database. Use when: Creating new WordPress plugins, implementing nonces/sanitization/e...developmentjavascriptrustVotes: 0GitHub stars: 16
Yaml Config HelperAValidate, format, and troubleshoot YAML configuration filestoolsdockerkubernetesVotes: 0GitHub stars: 16
Youtube DownloaderADownload videos, audio, playlists, and channels from YouTube and 1000+ websites using yt-dlp. Supports quality selection, format conversion, subtitle download, playlist filtering, metadata extraction, thumbnail download, and batch operations. Use when downloading YouTube videos in any quality (4K, 8K, HDR), extracting audio as MP3/M4A/FLAC, downloading entire playlists/channels, getting subtitles in multiple languages, converting to specific formats, downloading live streams, archiving conten...toolspythonbashVotes: 0GitHub stars: 16