All authors
Claude Skills by lilinji
github.com/lilinji193 skills0 installs365 views
- Metabolomics DeLoad when running two-group metabolomics DE (t-test + log2FC + BH-FDR + PCA) on a featureVotes: 0GitHub stars: 8
- Metabolomics NormalizationLoad when normalising a feature × sample metabolomics CSV via median, quantile, total (sum),Votes: 0GitHub stars: 8
- Metabolomics Pathway EnrichmentLoad when running over-representation analysis (ORA) on a metabolite list via Fisher's exactVotes: 0GitHub stars: 8
- Metabolomics Peak DetectionLoad when running per-sample peak picking on a feature × intensity table via `scipy.signal.find_peaks`Votes: 0GitHub stars: 8
- Metabolomics QuantificationLoad when imputing missing values (min / median / KNN) and normalising (TIC / median / log)Votes: 0GitHub stars: 8
- Metabolomics StatisticsLoad when running univariate two-group testing (t-test / Wilcoxon / ANOVA / Kruskal-Wallis)Votes: 0GitHub stars: 8
- Metabolomics Xcms PreprocessingLoad when running an XCMS-style preprocessing summary on LC-MS metabolomics raw / vendor-convertedVotes: 0GitHub stars: 8
- NutrigxPersonalised nutrition report from consumer genetic data (23andMe, AncestryDNA, VCF) — interrogates nutritionally-relevantVotes: 0GitHub stars: 8
- Nutrigx Advisor**Skill ID**: `nutrigx-advisor` **Version**: 0.1.0 **Status**: MVP **Author**: David de Lorenzo (ClawBio Community) **Requires**: Python 3.11+, pandas, numpy, matplotlib, seaborn, reportlab (optional) ---Votes: 0GitHub stars: 8
- Omics Skill BuilderLoad when scaffolding a NEW OmicsClaw skill from a natural-language request — generates theVotes: 0GitHub stars: 8
- OrchestratorLoad when routing a natural-language omics query to the correct domain skill across spatialVotes: 0GitHub stars: 8
- Patiently AiPatiently AI simplifies medical documents for patients. Takes doctor's letters, test results, prescriptions, discharge summaries, and clinical notes and explains them in clear, personalised language. Built by PharmaTools.AI.Votes: 0GitHub stars: 8
- Phi HandlingIdentify and handle PHI in software to enforce minimum necessary use, encryption, access control, and retention/deletion policies.Votes: 0GitHub stars: 8
- Pipeline DesignDefine regulated-friendly CI/CD pipelines with compliance checks, artifact management, and auditability for medical device software.Votes: 0GitHub stars: 8
- Power ManagementDefine safe power management patterns: sleep modes, wake sources, power budget, battery monitoring, graceful shutdown, and data preservation.Votes: 0GitHub stars: 8
- Proteomics Data ImportLoad when ingesting a MaxQuant `proteinGroups.txt`, FragPipe `combined_protein.tsv`, DIA-NNVotes: 0GitHub stars: 8
- Proteomics DeLoad when computing two-group differential protein abundance (group2 vs group1, log2FC +Votes: 0GitHub stars: 8
- Proteomics EnrichmentLoad when running over-representation analysis (ORA) on a list of proteins via Fisher's exactVotes: 0GitHub stars: 8
- Proteomics IdentificationLoad when summarising peptide identifications (PSM count, unique peptide count, distinctVotes: 0GitHub stars: 8
- Proteomics Ms QcLoad when computing protein-table QC — proteins × samples count, missing-value rate, intensityVotes: 0GitHub stars: 8
- Proteomics PtmLoad when summarising PTM sites (phosphorylation, acetylation, ubiquitination, etc.) fromVotes: 0GitHub stars: 8
- Proteomics QuantificationLoad when computing per-protein abundance from a peptide / PSM table via LFQ (intensity summation),Votes: 0GitHub stars: 8
- Proteomics StructuralLoad when summarising cross-linking MS (XL-MS) results — intra/inter-protein link split,Votes: 0GitHub stars: 8
- Pubmed SearchSearch PubMed biomedical literature with natural language queries powered by Valyu semantic search. Full-text access, integrate into your AI projects.Votes: 0GitHub stars: 8
- Release ManagementDefine controlled release process for medical device software: versioning, branching, verification, approvals, documentation, and post-release monitoring.Votes: 0GitHub stars: 8
- Rtos PatternsProvide safe RTOS usage patterns: task design, priorities, IPC, deadlines, priority inversion avoidance, and timing analysis for medical devices.Votes: 0GitHub stars: 8
- Safety ClassificationDefine how safety classification (IEC 62304 Class A/B/C) influences architecture, segregation, documentation, and testing, ensuring controls scale with risk.Votes: 0GitHub stars: 8
- Sc Ambient RemovalLoad when removing ambient RNA contamination from droplet-based scRNA-seq using a simpleVotes: 0GitHub stars: 8
- Sc Batch IntegrationLoad when integrating multi-sample scRNA-seq with Harmony, scVI, scANVI, BBKNN, Scanorama,Votes: 0GitHub stars: 8
- Sc Cell AnnotationLoad when assigning cell-type labels to a clustered scRNA AnnData via marker dictionaries,Votes: 0GitHub stars: 8
- Sc Cell CommunicationLoad when computing cell-cell ligand-receptor communication on an annotated scRNA AnnDataVotes: 0GitHub stars: 8
- Sc ClusteringLoad when building the neighbour graph, embedding (UMAP/t-SNE/diffmap/PHATE), and clusteringVotes: 0GitHub stars: 8
- Sc Consensus ClusteringLoad when you want resolution-robust single-cell clusters on a preprocessed scRNA AnnDataVotes: 0GitHub stars: 8
- Sc Consensus IntegrationLoad when you want a multi-sample single-cell (scRNA) clustering robust to the choice ofVotes: 0GitHub stars: 8
- Sc Consensus PseudotimeLoad when you want a single-cell pseudotime ordering robust to the choice of trajectory methodVotes: 0GitHub stars: 8
- Sc CountLoad when turning scRNA FASTQ (or existing CellRanger/STARsolo/SimpleAF/kb-python output)Votes: 0GitHub stars: 8
- Sc CytotraceLoad when computing per-cell differentiation potency / stemness scores from gene-expressionVotes: 0GitHub stars: 8
- Sc DeLoad when finding marker genes per cluster or comparing condition expression in single-cellVotes: 0GitHub stars: 8
- Sc Differential AbundanceLoad when testing whether cell-type / cluster proportions or neighbourhood densities differVotes: 0GitHub stars: 8
- Sc Doublet DetectionLoad when annotating putative doublets in single-cell RNA-seq using Scrublet, DoubletDetection,Votes: 0GitHub stars: 8
- Sc Drug ResponseLoad when scoring drug sensitivity per cluster on an annotated scRNA AnnData via simple-correlationVotes: 0GitHub stars: 8
- Sc EnrichmentLoad when running bulk-style pathway enrichment (ORA / GSEA / GSEA-R / GSVA-R) on a per-groupVotes: 0GitHub stars: 8
- Sc Fastq QcLoad when checking raw single-cell FASTQ read quality (Phred / GC / adapter / length) beforeVotes: 0GitHub stars: 8
- Sc FilterLoad when removing low-quality cells and lowly-detected genes from a single-cell AnnDataVotes: 0GitHub stars: 8
- Sc Gene ProgramsLoad when extracting gene programs (NMF / cNMF factorisation) and per-cell program usageVotes: 0GitHub stars: 8
- Sc GrnLoad when inferring TF → target gene regulatory networks on a normalised scRNA AnnData viaVotes: 0GitHub stars: 8
- Sc In Silico PerturbationLoad when predicting in-silico gene knockout effects on a normalised scRNA AnnData via GRN-basedVotes: 0GitHub stars: 8
- Sc Integrate ClusterLoad when running a single batch-correction representation (none/Harmony/Scanorama/scVI)Votes: 0GitHub stars: 8
- Sc MarkersLoad when ranking cluster-level marker genes from a clustered single-cell AnnData via ScanpyVotes: 0GitHub stars: 8
- Sc MetacellLoad when aggregating single cells into metacells (sample-aware coarse-grained pseudo-cells)Votes: 0GitHub stars: 8