All authors
Claude Skills by NVlabs
github.com/NVlabs1,342 skills6 installs400 views
- Alterlab Nmc Multimedia StoryThis skill should be used when the user asks about "multimedia storytelling", "interactive story", "longform web feature", "cross-platform narrative", "scrollytelling", "immersive journalism", "act as a multimedia story builder", "multimedia story mode", "web documentary", "transmedia narrative", "visual storytelling", "digital longform", "parallax story", "Shorthand", "Scrollama", "StoryMap", "interactive feature", "Juxtapose", or needs expertise in designing and producing cross-platform nar...Votes: 0GitHub stars: 36
- Alterlab Nmc NewsletterThis skill should be used when the user asks about "newsletter", "email newsletter", "email content strategy", "subject lines", "newsletter structure", "email marketing", "act as a newsletter designer", "newsletter mode", "Substack", "Mailchimp", "CTA optimization", "open rate", "email design", "subscriber growth", "Beehiiv", or needs expertise in planning, writing, and optimizing email newsletters. Part of the AlterLab FC Skills collection (New Media & Communication department).Votes: 0GitHub stars: 36
- Alterlab Nmc Podcast ProducerThis skill should be used when the user asks about "podcast production", "episode planning", "podcast script", "show notes", "audio editing", "podcast launch", "RSS feed", "act as a podcast producer", "podcast producer mode", "interview preparation", "podcast format", "podcast distribution", "recording setup", "podcast monetization", "podcast microphone", "DAW workflow", "audio mastering", "podcast hosting platform", "episode outline", "podcast trailer", "podcast editorial calendar", or needs...Votes: 0GitHub stars: 36
- Alterlab Nmc Portfolio CuratorThis skill should be used when the user asks about "digital portfolio", "portfolio website", "project description", "case study", "portfolio curation", "creative portfolio", "act as a portfolio curator", "portfolio curator mode", "portfolio review", "professional presentation", "portfolio architecture", "work samples", "portfolio bio", or needs expertise in building, structuring, and writing professional digital portfolios. Part of the AlterLab FC Skills collection (New Media & Communication ...Votes: 0GitHub stars: 36
- Alterlab Nmc Social AnalystThis skill should be used when the user asks about "social media analytics", "platform analytics", "audience insights", "engagement rate", "social media strategy report", "competitive benchmarking", "act as a social media analyst", "social analyst mode", "social media metrics", "content performance", "follower growth", "social media audit", "social listening", or needs expertise in analyzing social media data and translating it into actionable strategy reports. Part of the AlterLab FC Skills ...Votes: 0GitHub stars: 36
- Alterlab Nmc Web StrategistThis skill should be used when the user asks about "web content strategy", "SEO writing", "UX writing", "information architecture", "content architecture", "website structure", "act as a web content strategist", "web strategist mode", "site map", "content audit", "microcopy", "meta descriptions", "content hierarchy", "content governance", or needs expertise in planning, structuring, and writing content for websites and digital platforms. Part of the AlterLab FC Skills collection (New Media & ...Votes: 0GitHub stars: 36
- Alterlab OmeroManages microscopy image data on an OMERO server via the OMERO Python API (BlitzGateway) — access images, retrieve datasets, read pixel data, manage ROIs and annotations, and batch-process. Use when connecting to an OMERO server, pulling microscopy images or datasets, analyzing pixels, managing ROIs/annotations, or running high-content screening and microscopy workflows. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab Open ScienceGuidance for open science practices — preregistration (OSF Registries, AsPredicted, PROSPERO, ClinicalTrials.gov), open data and FAIR principles, repository choice (Zenodo, Dryad, Figshare), open access routes (Green/Gold/Diamond), Creative Commons licensing, reproducible computational workflows (Docker, Binder, Code Ocean), registered reports, open peer review, and TOP Guidelines. Use when preregistering a study, writing the FAIR data-sharing and repository section of a grant data management...Votes: 0GitHub stars: 36
- Alterlab OpenalexQuery and analyze scholarly literature using the OpenAlex API across 240M+ works, retrieving papers, authors, institutions, citations, and open access status. Use when searching academic papers, tracking citations, finding works by author or institution, analyzing research trends, discovering open access publications, or running bibliometric analysis. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab OpentargetsQuery the Open Targets Platform GraphQL API for target-disease associations, tractability and safety data, genetics/omics evidence, and known drugs. Use when identifying or prioritizing therapeutic drug targets, assessing target druggability/safety, or gathering target-disease evidence for drug discovery. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab OpentronsWrites liquid-handling protocols for Opentrons OT-2 and Flex robots using the official Opentrons Protocol API v2, with full access to v2 features for production-grade, officially compatible protocols. Use when authoring or running protocols specifically for Opentrons hardware. For multi-vendor automation or broader equipment control use pylabrobot instead. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab PdbAccess the RCSB Protein Data Bank (PDB) for EXPERIMENTALLY determined 3D structures (X-ray, cryo-EM, NMR) of proteins and nucleic acids — searching by text, sequence, or structure similarity and downloading coordinates in PDB/mmCIF format with metadata. Use when retrieving a structure by PDB ID, running sequence or structure similarity searches, or obtaining experimental coordinates for structural biology and drug discovery; for AI-PREDICTED structures of proteins lacking experimental data pr...Votes: 0GitHub stars: 36
- Alterlab Peer ReviewWrites structured, checklist-based manuscript and grant peer reviews — assesses methodology, statistical validity, reporting-standards compliance (CONSORT/STROBE/PRISMA), and gives constructive feedback. Use when writing a formal reviewer report, responding to a journal/grant review invitation, or revising a manuscript against reviewer criteria. For evaluating claims/evidence quality prefer alterlab-scientific-thinking; for a multi-reviewer mock-panel verdict use alterlab-paper-reviewer; for ...Votes: 0GitHub stars: 36
- Alterlab PennylaneTrains and differentiates quantum circuits with PennyLane, a hardware-agnostic quantum machine-learning framework with automatic differentiation and PyTorch/JAX/TensorFlow integration. Use when training quantum circuits via gradients (parameter-shift, backprop, adjoint), building hybrid quantum-classical models or quantum neural networks, or running differentiable variational algorithms (VQE, QAOA). For IBM Quantum hardware and Qiskit Runtime prefer alterlab-qiskit; for Google Quantum AI or N...Votes: 0GitHub stars: 36
- Alterlab PhylogeneticsBuild phylogenetic trees end-to-end from raw sequences — MAFFT multiple sequence alignment, optional TrimAl trimming, IQ-TREE 2 maximum-likelihood inference with model selection and bootstraps, FastTree for large datasets, then visualize with ETE3 or FigTree. Use when reconstructing trees from sequences (FASTA) for evolutionary analysis, microbial genomics, viral phylodynamics, protein-family studies, or molecular-clock dating. For manipulating/comparing an EXISTING Newick tree (prune, root, ...Votes: 0GitHub stars: 36
- Alterlab PlotlyBuilds INTERACTIVE charts with the Plotly Python library (plotly.express / graph_objects) — hover tooltips, zoom/pan, animations, rangesliders, 3D rotation, and standalone HTML/web-embeddable output. Use when a chart must be interactive or web-embedded, for dashboards (incl. Dash), exploratory data analysis, or rotatable 3D plots. For static publication figures defer to alterlab-matplotlib; for static statistical charts (heatmaps, distributions) defer to alterlab-seaborn; for diagrams/schemat...Votes: 0GitHub stars: 36
- Alterlab PolarsFast in-memory DataFrame analytics with Polars — lazy evaluation, parallel execution, and an Apache Arrow backend for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory, for 1-100GB datasets, ETL pipelines, or a faster pandas replacement. For larger-than-RAM data prefer dask or vaex. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab Pptx PostersCreates research posters in HTML/CSS with responsive layouts and easy visual integration, exportable to PDF or PPTX. Use ONLY when the user explicitly requests a PowerPoint/PPTX/PPT poster, an HTML/web-based poster, or a poster they will edit in PowerPoint, or when LaTeX is unavailable. For a standard/conference research poster with no format named, use alterlab-latex-posters instead; for a slide deck/oral-talk presentation, use alterlab-scientific-slides. Part of the AlterLab Academic Skills...Votes: 0GitHub stars: 36
- Alterlab Pra Brand AnalystThis skill should be used when the user asks about "brand analysis", "brand audit", "brand equity", "brand positioning", "competitive intelligence", "Keller CBBE model", "Aaker brand model", "brand identity prism", "brand health", "perceptual mapping", "act as a brand analyst", "brand analyst mode", "brand architecture", "brand scorecard", "brand tracking", "brand differentiation", "brand portfolio", "endorsed brand", "hybrid brand architecture", "competitive brand analysis", or needs experti...Votes: 0GitHub stars: 36
- Alterlab Pra Campaign StrategistThis skill should be used when the user asks about "campaign strategy", "IMC planning", "integrated marketing communications", "campaign architecture", "strategic brief", "ROSTIR model", "campaign plan", "act as a campaign strategist", "campaign strategist mode", "communication strategy", "campaign framework", "strategic planning for advertising", "RACE model", "PESO model", "media mix", "campaign evaluation", "campaign one-pager", "big idea", "campaign phasing", "campaign budget", or needs e...Votes: 0GitHub stars: 36
- Alterlab Pra Consumer InsightThis skill should be used when the user asks about "consumer insights", "audience research", "buyer personas", "customer journey mapping", "survey design", "focus group guide", "target audience analysis", "psychographics", "consumer behavior", "audience segmentation", "act as a consumer researcher", "consumer insight mode", "empathy mapping", "research debrief", "qualitative research", "quantitative research", "ethnography", "depth interviews", "laddering technique", "means-end chain", "consu...Votes: 0GitHub stars: 36
- Alterlab Pra Creative BriefThis skill should be used when the user asks about "creative brief", "communication brief", "single-minded proposition", "SMP", "one-page brief", "briefing the creative team", "writing a brief", "agency brief", "campaign brief", "act as a brief writer", "creative brief mode", "strategic brief", "key message development", "target audience brief", or needs expertise in writing concise, inspiring creative briefs that direct campaign development. Part of the AlterLab FC Skills collection (Public ...Votes: 0GitHub stars: 36
- Alterlab Pra Csr DesignerThis skill should be used when the user asks about "CSR campaign", "corporate social responsibility", "cause marketing", "social impact campaign", "purpose-driven marketing", "theory of change", "impact measurement", "sustainability communication", "act as a CSR designer", "CSR designer mode", "social cause campaign", "ESG communication", "cause-related marketing", or needs expertise in designing social responsibility campaigns with measurable impact and authentic brand alignment. Part of the...Votes: 0GitHub stars: 36
- Alterlab Pra Market ResearchThis skill should be used when the user asks about "market research", "market analysis", "PESTEL analysis", "competitive landscape", "trend report", "industry analysis", "market sizing", "data interpretation", "competitive analysis", "act as a market researcher", "market research mode", "market trends", "SWOT analysis", "market opportunity", or needs expertise in analyzing markets, interpreting data, and producing strategic market intelligence reports. Part of the AlterLab FC Skills collectio...Votes: 0GitHub stars: 36
- Alterlab Pra Media PlannerThis skill should be used when the user asks about "media planning", "media strategy", "media buying", "channel selection", "budget allocation", "CPM", "GRP", "reach and frequency", "media mix", "flighting schedule", "media flowchart", "act as a media planner", "media planner mode", "advertising spend", "media brief", or needs expertise in strategic media planning, channel selection, and budget optimization across paid media. Part of the AlterLab FC Skills collection (Public Relations & Adver...Votes: 0GitHub stars: 36
- Alterlab Pra Pitch BuilderThis skill should be used when the user asks about "pitch deck", "client pitch", "agency pitch", "presentation structure", "credentials deck", "competition entry", "pitch presentation", "new business pitch", "act as a pitch builder", "pitch builder mode", "pitch strategy", "presentation design", "agency credentials", or needs expertise in building persuasive pitch decks, agency credentials, and competition entries. Part of the AlterLab FC Skills collection (Public Relations & Advertising depa...Votes: 0GitHub stars: 36
- Alterlab Pra Pr WriterThis skill should be used when the user asks about "press release", "media kit", "crisis communication", "PR writing", "public relations writing", "corporate communications", "media advisory", "speech writing", "spokesperson brief", "act as a PR writer", "PR writer mode", "media relations", "crisis statement", "internal communications", or needs expertise in writing professional public relations materials across all corporate communication formats. Part of the AlterLab FC Skills collection (P...Votes: 0GitHub stars: 36
- Alterlab Pra Report GeneratorThis skill should be used when the user asks about "campaign report", "performance report", "KPI dashboard", "campaign evaluation", "Barcelona Principles", "post-campaign analysis", "metrics report", "ROI measurement", "media evaluation", "act as a report generator", "report generator mode", "campaign results", "advertising effectiveness", "analytics report", or needs expertise in building campaign performance reports, evaluation frameworks, and KPI dashboards. Part of the AlterLab FC Skills ...Votes: 0GitHub stars: 36
- Alterlab PrimekgQueries the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biomedical relationships across genes, drugs, diseases, phenotypes, pathways, and biological processes. Use when exploring drug-disease or gene-disease links, building disease-centric knowledge subgraphs, or sourcing relations for drug repurposing and precision-medicine analyses. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab PubchemQuery PubChem via the PUG-REST API and PubChemPy across 110M+ compounds, searching by name, CID, or SMILES and retrieving molecular properties, bioactivity, and similarity/substructure matches. Use when looking up a chemical compound, converting names/SMILES to CIDs, fetching physicochemical properties, or running cheminformatics structure searches. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab PufferlibScales reinforcement learning with PufferLib — high-throughput parallel training (PuffeRL), vectorized environments, and native multi-agent systems achieving 2-10x speedups over standard implementations. Use when scaling RL to millions of steps per second, running vectorized or multi-agent setups, building custom PufferEnv tasks, or integrating game environments (Atari, Procgen, NetHack, PettingZoo). For standard single-agent algorithm implementations (PPO/SAC/DQN) or quick prototyping prefer...Votes: 0GitHub stars: 36
- Alterlab Pydeseq2Run differential gene expression analysis on bulk RNA-seq count matrices with PyDESeq2, the Python port of DESeq2 — size-factor normalization, dispersion estimation, Wald tests, FDR (Benjamini-Hochberg) correction, and volcano/MA plots. Use when identifying differentially expressed genes between conditions from raw bulk RNA-seq counts. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab PydicomReads, writes, and manipulates DICOM (Digital Imaging and Communications in Medicine) medical imaging files with the pydicom Python library. Use when reading/writing/modifying DICOM data, extracting pixel data from CT, MRI, X-ray, or ultrasound images, anonymizing DICOM files, working with DICOM metadata and tags, converting DICOM to other formats, handling compressed DICOM, or processing medical imaging datasets for PACS systems, radiology workflows, and healthcare imaging applications. Part...Votes: 0GitHub stars: 36
- Alterlab PyhealthDevelops, tests, and deploys clinical machine learning models with the PyHealth healthcare AI toolkit. Use when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare (RETAIN, SafeDrug, Transformer, GNN). Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab PylabrobotPrograms lab automation with PyLabRobot, a vendor-agnostic Python framework that unifies control across Hamilton, Tecan, Opentrons, plate readers, and pumps, with simulation support. Use when controlling multiple equipment types or needing unified cross-vendor programming for complex, multi-vendor liquid-handling workflows. For Opentrons-only protocols with the official API, alterlab-opentrons may be simpler. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab PymatgenAnalyzes and manipulates materials with the pymatgen toolkit — crystal structures and molecules, phase diagrams and thermodynamic stability, electronic structure (band structures, DOS), surfaces and interfaces, and Materials Project database access. Use when working with crystal structures in materials science, converting between structure formats (CIF, POSCAR, XYZ), analyzing symmetry or space groups, computing phase diagrams, querying the Materials Project API, or handling VASP, Gaussian, o...Votes: 0GitHub stars: 36
- Alterlab PymcBayesian modeling and probabilistic programming with PyMC — hierarchical models, MCMC (NUTS) sampling, variational inference, LOO/WAIC model comparison, and posterior predictive checks. Use when fitting Bayesian or hierarchical models, estimating posteriors and credible intervals, running probabilistic inference, or comparing models with LOO/WAIC. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab PymooMulti-objective optimization with pymoo — NSGA-II, NSGA-III, MOEA/D, Pareto-front computation, constraint handling, and standard benchmarks (ZDT, DTLZ). Use when solving multi-objective or constrained optimization problems, computing Pareto-optimal trade-offs, or tackling engineering design problems with competing objectives. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab PyopenmsBuild complete mass-spectrometry workflows with pyOpenMS — feature detection, peptide identification, protein quantification, and full LC-MS/MS pipelines across many MS file formats (mzML, mzXML) and algorithms. Use for comprehensive proteomics and MS data processing — for simple spectral comparison and metabolite identification use matchms. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab PysamRead and write genomic alignment and variant files in Python with pysam (htslib bindings) — SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences, plus region extraction and per-base coverage/pileup. Use when scripting NGS data-processing pipelines that parse, filter, index, or compute coverage over BAM/CRAM/VCF files. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab PytdcLoads Therapeutics Data Commons (TDC, PyTDC) AI-ready drug-discovery datasets and benchmarks — ADME, toxicity, drug-target interaction (DTI), scaffold splits, and molecular oracles for therapeutic ML and pharmacological prediction. Use when fetching a standardized benchmark dataset, applying scaffold or cold-split evaluation, or sourcing labeled molecules for ADMET, toxicity, or DTI modeling. Sources data, splits, and oracles only — defer molecular featurization (ECFP/fingerprints), model tra...Votes: 0GitHub stars: 36
- Alterlab Pytorch LightningScalable deep-learning training with PyTorch Lightning — organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, build data pipelines and callbacks, log to W&B or TensorBoard, and run distributed training (DDP, FSDP, DeepSpeed). Use when structuring PyTorch training loops, scaling neural-network training across GPUs/TPUs, or adding checkpointing, logging, and distributed strategies. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab QiskitBuilds, transpiles, and runs quantum circuits with Qiskit, IBM's quantum computing framework, including Qiskit Runtime primitives (Sampler/Estimator), circuit transpilation, and error mitigation on IBM Quantum hardware. Use when targeting IBM Quantum backends, transpiling circuits, running Runtime sessions or batches, or applying resilience/error mitigation. For Google Quantum AI hardware and NISQ circuits prefer alterlab-cirq; for gradient-trained quantum ML and hybrid quantum-classical mode...Votes: 0GitHub stars: 36
- Alterlab Qualitative MethodsComprehensive qualitative research methods assistant supporting thematic analysis (Braun & Clarke), grounded theory (Strauss & Corbin; Charmaz), interpretative phenomenological analysis (IPA), content analysis, narrative inquiry, ethnography, case study methodology (Yin), coding techniques (open/axial/selective), NVivo-style workflows with Python alternatives, trustworthiness criteria (Lincoln & Guba), reflexivity, and member checking. Use when designing or analyzing qualitative research — th...Votes: 0GitHub stars: 36
- Alterlab QutipSimulates open quantum systems with QuTiP, the Quantum Toolbox in Python, solving Lindblad master equations (mesolve), Monte Carlo trajectories (mcsolve), and unitary dynamics (sesolve). Use when studying master-equation or Lindblad dynamics, decoherence, dissipation, quantum optics, cavity QED, or open-system time evolution. NOT for circuit-based quantum computing or hardware execution — for IBM Quantum circuits prefer alterlab-qiskit, for Google Quantum AI or NISQ circuits prefer alterlab-c...Votes: 0GitHub stars: 36
- Alterlab RdkitProvides the RDKit cheminformatics toolkit for low-level, fine-grained molecular primitives — SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure/SMARTS search, 2D/3D coordinate generation, similarity, and reaction handling. Use when custom sanitization, specialized fingerprint or descriptor algorithms, reaction enumeration, or conformer generation demand direct API control; for a high-level pandas-friendly wrapper over RDKit prefer alterlab-datamol, and for turning m...Votes: 0GitHub stars: 36
- Alterlab ReactomeQuery the Reactome REST API for pathway analysis, over-representation/enrichment, gene-to-pathway mapping, disease pathways, molecular interactions, and expression analysis. Use when running pathway enrichment on a gene list, mapping genes to curated biological pathways, or exploring disease pathways for systems biology studies. Part of the AlterLab Academic Skills suite.Votes: 0GitHub stars: 36
- Alterlab Research EthicsInternational research ethics and compliance assistant supporting IRB/ethics board applications, informed consent drafting, data management plans, Belmont Report principles, Declaration of Helsinki (2024), GDPR compliance for research, HIPAA considerations, vulnerable populations protocols, deception research, confidentiality and anonymity, research integrity (fabrication/falsification/plagiarism), conflict of interest disclosure, and dual-use research oversight. Use when preparing an IRB or ...Votes: 0GitHub stars: 36
- Alterlab Research GrantsWrites competitive research grant proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC — applies agency-specific formatting and review criteria, prepares budgets, and drafts broader-impacts, significance statements, and innovation narratives that comply with submission requirements. Use when drafting or revising a grant proposal, aligning a proposal to a funding agency's review criteria, or preparing grant budgets and compliance sections. For Turkey's TÜBİTAK 1001/1002-A national proposals use...Votes: 0GitHub stars: 36
- Alterlab Rma Abstract WriterThis skill should be used when the user asks about "writing an abstract", "abstract format", "structured abstract", "IMRAD abstract", "conference abstract", "thesis abstract", "dissertation abstract", "abstract submission", "keyword selection", "research summary", "act as an abstract writer", "abstract writer mode", "executive summary", "abstract optimization", "abstract for publication", "paper abstract", "how to write an abstract", "abstract word limit", "abstract discoverability", "journal...Votes: 0GitHub stars: 36