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Research
Research, evidence gathering, literature, reports, investigation, and synthesis
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Showing 25–48 of 21,343 skills
- Alterlab TrdizinSearches TR Dizin (TÜBİTAK ULAKBİM national citation index) and verifies a journal's current national-index status through its confirmed unauthenticated REST/Elasticsearch API at https://search.trdizin.gov.tr/api/defaultSearch/{publication|journal|author|institution}/ (params q, order e.g. relevance-DESC, page), parsing hits.hits[]._source plus faceted aggregations, and derives indexing status from a journal record's isActive + journalYear coverage vs rejectYearList. Use when the user wants t...Votes: 0GitHub stars: 158
- Alterlab Tr Research EthicsScaffolds Turkish human-subjects etik kurul (ethics committee) applications and routes a study to the correct committee using the TR Dizin/ULAKBIM 2020 trigger rule: survey, interview, focus-group, observation, or experiment data collection requires a university Girisimsel Olmayan Etik Kurulu (non-interventional committee); drug, device, cosmetic, stem-cell, or BA-BE clinical studies also require a TITCK-approved Klinik Arastirmalar Etik Kurulu plus a separate TITCK permit. Generates bilingua...Votes: 0GitHub stars: 158
- Alterlab Tr Academic StyleFormats manuscripts for Turkish journals: TR Dizin submission rules (TR Dizin mandates a set abstract word limit, two referees from different institutions, Latin script for non-Latin-alphabet articles, and only suggests a second-language abstract; bilingual oz/abstract ~200-250 words and 3-5 keywords are common journal house conventions to confirm against the journal's yazim kurallari) and the Turkish adaptation of APA-7 (ve ark./vd. for multi-author cites, ampersand only in the reference lis...Votes: 0GitHub stars: 158
- Alterlab Test Selection GuardEnforces statistical-test selection as a discipline, holding the Iron Law NO TEST CHOSEN AFTER SEEING THE P-VALUE: routes the choice through a fixed decision tree (outcome type -> groups -> paired? -> normality) terminating in named tests (t-test, Mann-Whitney U, ANOVA, Kruskal-Wallis, Wilcoxon, Friedman, chi-square, Pearson/Spearman, regression), gates interpretation behind a mandatory Shapiro-Wilk/Levene/linearity assumption check, blocks test-shopping with an Excuse-vs-Reality table and Re...Votes: 0GitHub stars: 158
- Alterlab Syllabus Ai PolicyDrafts course-level generative-AI use policies and syllabus statements: assigns each graded task a permitted/restricted/prohibited tier (modeled on Cornell's prohibit/allow-with-attribution/encourage framework), writes the disclosure clause with a verbatim APA (OpenAI, 2023) or MLA Works Cited citation template for ChatGPT, and adds assessment-integrity, accessibility, and equity language bound to the institution's own academic-integrity code. Ships scripts/policy_builder.py to emit a paste-r...Votes: 0GitHub stars: 158
- Alterlab Ssci Sampling GateGates who is sampled, how, and how many before data collection — checks that the sampling FRAME matches the target population (coverage error), that the METHOD is named (probability vs non-probability: simple random, stratified, cluster, systematic, quota, convenience, snowball), that sample SIZE follows the inference paradigm (an a-priori power analysis for hypothesis tests, a precision/margin-of-error target for estimation, or saturation/information power for qualitative studies — never a r...Votes: 0GitHub stars: 158
- Alterlab Ssci Reflexivity GateGates trustworthiness before qualitative or interpretivist claims are written — the qualitative analog of the measurement gate. Checks that researcher positionality and role are stated, that the four Lincoln & Guba trustworthiness criteria are addressed (credibility via triangulation / member-checking / prolonged engagement, transferability via thick description, dependability via an audit trail, confirmability via reflexive bracketing), and that reflexivity is evidenced rather than asserted....Votes: 0GitHub stars: 158
- Alterlab Ssci OrchestratorCoordinates a social-science study through the stage-gated methods pipeline — question then design-gate then measurement-gate then sampling-gate then the right analysis module then inference-gate then reporting — holding a single YAML Design Passport that each gate reads and appends, and enforcing gate order with PASS / WARN / BLOCK semantics (design-gate and inference-gate are fail-closed). It is thin: it routes and holds the artifact, it does not run analysis itself. Use when a researcher d...Votes: 0GitHub stars: 158
- Alterlab Ssci Measurement GateGates measurement quality before a scale or instrument is trusted — checks that each construct is defined and operationalized, that reliability is evidenced with McDonald omega (not Cronbach alpha alone, which assumes tau-equivalence and is only a lower bound), that reliability is not confused with validity (content, criterion, convergent/discriminant construct validity), and that measurement invariance is tested before comparing groups. Use when asking whether a scale or survey instrument is...Votes: 0GitHub stars: 158
- Alterlab Ssci Inference GateAudits final inferential claims against the design, sample, and uncertainty before they are written or published — refuses causal language unless the design's identifying assumption is defended (else downgrades to associational), corrects p-value and confidence-interval misreadings (a p-value is not the probability the null is true, non-significance is not proof of no effect, a 95% CI is not a 95% probability the parameter is inside it), demands effect sizes with intervals rather than signifi...Votes: 0GitHub stars: 158
- Alterlab Ssci Design GateRoutes a social-science study to its research design — true experiment, quasi-experiment (difference-in-differences, instrumental variables, regression discontinuity, interrupted time series, fixed effects), observational/correlational, qualitative, or mixed — by walking the random-selection and random-assignment decisions, then PINS the identifying assumption the causal claim will rest on (parallel trends, exclusion restriction, continuity at the cutoff, selection-on-observables, or qualitat...Votes: 0GitHub stars: 158
- Alterlab Skill FinderThe AlterLab front door and multi-agent launcher — routes a task to the right AlterLab skill(s) when the user invokes the suite without naming one, and for a multi-stage goal (or on the keyword 'alterflow', aliases 'alterresearch' / 'ultralab') it CLARIFIES the goal with a few questions, SELECTS the skills the task needs, and runs a dynamic multi-agent workflow composing them (via alterlab-workflow-orchestration, alterlab-research-pipeline, or alterlab-ssci-orchestrator). Triggers on 'use Alt...Votes: 0GitHub stars: 158
- Alterlab Results TransparencyEnforces results-reporting transparency as a discipline gate built on the Iron Law "NO RESULTS CLAIM WITHOUT REPORTING EVERY ANALYSIS RUN" — a numbered Gate Function (IDENTIFY the claim, LIST every test actually run including the ones that did not "work", CHECK assumptions were reported, CHECK effect size with 95% CI is present, CHECK pre-registration deviations are disclosed, ONLY THEN write the sentence), plus an Excuse-vs-Reality table and Red-Flags-STOP list for selective reporting, cherr...Votes: 0GitHub stars: 158
- Alterlab Recommendation LettersDrafts evidence-anchored academic reference and recommendation letters across types — graduate admission, faculty hiring, tenure/promotion external review, fellowship, and award nomination — from a structured prompt of candidate accomplishments, role context, evaluator relationship, and audience, calibrating specificity and register to the letter type and running a no-fabrication guard that flags unsupported superlatives, unanchored rankings, and claims with no evidence in the supplied dossie...Votes: 0GitHub stars: 158
- Alterlab Preregistration DisciplineEnforces pre-registration discipline with the Iron Law NO DATA ANALYSIS WITHOUT A PRE-REGISTERED ANALYSIS PLAN FIRST, a spirit-vs-letter line, an Excuse-vs-Reality rationalization table, and a Red-Flags-STOP list (HARKing, optional stopping, post-hoc covariates, outlier-dropping, test-shopping). Runs a PLAN/COLLECT/CONFIRM/EXPLORE workflow that freezes hypotheses, tests, exclusions, and stopping rules before data, then forces unplanned findings to be labeled exploratory (their p-values lose c...Votes: 0GitHub stars: 158
- Alterlab Preprint DepositionDrives preprint deposition across servers (arXiv, bioRxiv, medRxiv, SSRN, OSF Preprints): picks the right server by field, prepares submission metadata, sets the license (arXiv offers CC BY/BY-SA/BY-NC-SA/BY-NC-ND 4.0, the arXiv non-exclusive license, or CC0; bioRxiv/medRxiv offer CC BY/BY-NC/BY-ND/BY-NC-ND/CC0 or No-reuse), maps arXiv category taxonomy, handles immutable versioning and preprint DOIs, checks a journal's preprint/self-archiving policy via the Sherpa Romeo v2 API, and links the...Votes: 0GitHub stars: 158
- Alterlab Pdf ExploreExplore a single PDF in depth — parse it once, then answer questions across its sections, figures, tables, and appendices — comparing methods across sections, extracting every instance of a pattern within the document, and reading values off its charts and tables. Use when interrogating one paper or report end-to-end, pulling every occurrence of something inside a document, or reading data from a figure/table in a PDF, serving the literature-review and paper-review pipeline. To build a compar...Votes: 0GitHub stars: 158
- Alterlab Meta AnalysisRuns quantitative meta-analysis — computes effect sizes (Hedges' g / standardized mean difference, log odds/risk ratios) with their variances, pools them under fixed-effect and random-effects models, quantifies heterogeneity (I-squared, tau-squared, Cochran's Q), draws forest and funnel plots, and tests publication bias (Egger's regression, trim-and-fill) — using statsmodels.stats.meta_analysis in Python or the field-standard R metafor via Rscript. It enforces PRISMA reporting and the random-...Votes: 0GitHub stars: 158
- Alterlab Figure QaVerify publication figures with a render-then-check QA pass — data-fidelity against every underlying row, axis/label floor-and-ceiling legibility, bounding-box collision detection for overlapping text/markers, and 300-dpi print-readiness. Use when proofing or auditing a finished figure for correctness and print quality, catching mislabeled or overlapping elements, or confirming a plot faithfully represents its data before submission. For CREATING the plot prefer alterlab-matplotlib (or alterl...Votes: 0GitHub stars: 158
- Alterlab Docentlik EligibilityRuns a PARTIAL pre-screen of a Turkish associate-professorship (doçentlik) publication list against the ÜAK (Üniversitelerarası Kurul) Sağlık Bilimleri TABLO 10 criteria, applying the author-share rule (full; 0.8 + 0.5; lead-author half-the-rest split) and pass-fail checking the four computable minimums (≥100 total, ≥90 post-doctorate, ≥40 SCIE/SSCI article points, ≥3 lead-author Q1–Q4 articles). It deliberately does NOT emit an ELIGIBLE verdict — it lists the unmodelled mandatory minimums (T...Votes: 0GitHub stars: 158
- Alterlab Citation VerifierVerifies that every entry in a bibliography ACTUALLY EXISTS by cross-checking it against four keyless public scholarly APIs (Crossref, OpenAlex, Semantic Scholar, arXiv) with a polite mailto identifier, resolving DOI/arXiv IDs, fuzzy-matching title and authors (difflib SequenceMatcher ratio >=0.70), flagging retractions marked in Crossref (update-to) or OpenAlex (is_retracted), and emitting per-entry JSON verdicts mapped to the AlterLab citation-hallucination taxonomy (TF/PAC/IH/PH/SH). Accep...Votes: 0GitHub stars: 158
- Alterlab ChaiPredict biomolecular complexes with Chai-1, an open AlphaFold3-style model that folds multi-entity assemblies (proteins, ligands, nucleic acids) from a single typed FASTA — strong on antibody–antigen and protein–ligand complexes, with optional MSA and restraint inputs. Use when predicting an antibody–antigen complex, folding a mixed protein/ligand/nucleic-acid assembly described in one FASTA, or generating a complex with experimental restraints. For binding-affinity prediction or a ligand-foc...Votes: 0GitHub stars: 158
- Alterlab BoltzCo-fold biomolecular complexes with Boltz-2, an open AlphaFold3-style model — predict protein + ligand (SMILES/CCD), protein + nucleic-acid, and multi-chain structures in one pass, with binding-affinity prediction. Use when folding a protein together with a small-molecule ligand, predicting a holo (ligand-bound) complex or its binding affinity, or co-folding protein–DNA/RNA assemblies. For protein-only or protein–protein folding without ligands prefer alterlab-alphafold; for antibody–antigen ...Votes: 0GitHub stars: 158
- Alterlab ApertaDrives TÜBİTAK Açık Bilim Politikası (Open Science Policy) compliance and deposition into Aperta — TÜBİTAK ULAKBİM's national open archive at aperta.ulakbim.gov.tr — encoding the binding mandates (green-road deposit of the accepted manuscript on acceptance; open access within 6 months for fen/mühendislik (STEM) and 12 months for sosyal/beşeri (SSH); İlke-6 documentation when data must stay closed for KVKK/privacy reasons) and scaffolding a TÜBİTAK Veri Yönetim Planı / VYP (data management pla...Votes: 0GitHub stars: 158