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Agent Notepad

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Persistent, per-objective working memory for coding agents — one standalone git "notepad" repo per objective that survives context compaction, spans multiple code repos from a single session, keeps an append-only journal, and mirrors into an episodic memory index. Ships as a Claude Code plugin (hooks + skills + notepad template + a memory adapter). Evolves and supersedes handoff-auto. Use when setting up objective-scoped agent memory, running several long-lived concurrent agent sessions, surv...

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  • Added September 24, 2026
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  • claude code

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npx -y skills add OneDro1d/dark-factory --skill agent-notepad --agent claude-code

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SKILL.md
---
name: agent-notepad
description: Persistent, per-objective working memory for coding agents — one standalone git "notepad" repo per objective that survives context compaction, spans multiple code repos from a single session, keeps an append-only journal, and mirrors into an episodic memory index. Ships as a Claude Code plugin (hooks + skills + notepad template + a memory adapter). Evolves and supersedes handoff-auto. Use when setting up objective-scoped agent memory, running several long-lived concurrent agent sessions, surviving auto-compaction, enabling `/clear` instead of `/compact`, driving several code repos from one place without `cd`, or installing/uninstalling the notepad hooks. Triggers on "agent notepad", "working memory notepad", "per-objective memory", "scope-init", "survive compaction", "cross-repo agent memory", "supersede handoff-auto".
---

# agent-notepad — persistent, per-objective working memory

## What this is

A **notepad** is one standalone git repo per objective (`<group>-<objective>`, e.g.
`proj-arbbot`), holding the agent's *working memory* for that objective. It survives
context compaction, keeps history (append-only journal, not a rewrite), spans several
code repos from a single session, and syncs across machines. It is the short-term,
auto-loaded tier that complements a curated long-term store — and it **evolves and
supersedes** handoff-auto: the same continuity machinery,
now objective-scoped instead of cwd-scoped, with history and cross-repo reach.
⚠️ handoff-auto is deliberately UNBACKTICKED and unlinked here: it was REMOVED from this
repo on 2026-09-04, and a backticked name reads to `tier-check.py` as a reference to a
component this tier ships — which is what the gate caught. The plugin installer still
UNWIRES its old hook entries from an existing `settings.json`; that is for machines
installed before the removal, and it stays.

Product = **a Claude Code plugin**: hooks + skills + a notepad template + a small Python
memory adapter. No binary, no daemon. Full rationale in [`DESIGN.md`](./DESIGN.md).

## Why it beats naive auto-handoff

handoff-auto keys by cwd → one rewritten file → parallel sessions clobber, no history,
single-repo. A notepad gives **zero contention** (separate folder + cwd + git repo per
objective), **append-only history**, and **cross-repo context** driven from one place via
absolute paths (never `cd`). The episodic memory index is exercised at both ends by hooks
(write-mirror on Stop, query on digest build), so "memory is actually used" is enforced,
not left to agent discretion.

## The four layers

| Layer | Anchored to | Where |
|---|---|---|
| **Working memory (Notes)** | the *task* | the notepad repo (`NOTES.md` + journal) — this skill |
| **Per-repo context store** | *code* (`file:line`) | `<code-repo>/.claude/context/` — df-context-store |
| **Episodic index** | journals, by prefix | the memory index (MemPalace ref impl) — mirror + digest |
| **Curated** | distilled cross-project | the long-term store ([Engram](../../starter-kit/instance/AUTHENTICATION.md#engram) ref) — existing |

## Notepad layout

```
proj-arbbot/
  CLAUDE.md            # orientation: objective, repos-in-scope, read-first/dispatch rules
  NOTES.md             # compact working memory, auto-loaded (≤150 lines, redacted)
  SCOPE.md             # charter: objective, done-criteria, repo subset
  DIGEST.md            # standing caveats, hand-maintained, COMMITTED, auto-loaded
  repos.manifest.json  # the CODE repos this notepad drives
  sessions/
    index.json         # session metadata index
    <ISO8601>_<id>.jsonl   # append-only journal, one file per session
  handoffs/            # deliberate structured handoff docs (/handoff → forces push)
  .claude/settings.json  # notepad-scoped hooks incl. the commit gate
```

## The hooks (what runs when)

- **SessionStart** — best-effort `git pull`, then FILE-READS-ONLY inject `NOTES.md` +
  `DIGEST.md` + `repos.manifest.json` (~1–3 s). Outside a notepad, degrades to
  handoff-auto behavior.
  **The payload has no size ceiling, and this is load-bearing.** It is piped to `jq -Rs`,
  never passed as an argv element. Until 2026-09-04 it used `jq -n --arg`, and Linux caps
  one argv element at 128 KB (`MAX_ARG_STRLEN`) while macOS caps only the ~1 MB total — so
  a 259 KB `NOTES.md` restored fine on the maintainer's laptop and **injected zero bytes on
  every Linux box in the fleet**, with the hook still exiting 0.
  ⚠️ **A restore that emits nothing is indistinguishable from a notepad with nothing to
  say.** That is why the encode failure path now injects a WARNING naming `NOTES.md` and
  `DIGEST.md` instead of staying silent: the hook contract is *exit 0 always*, so the
  payload is the only channel that reaches the session — stderr is read by nobody.
  ⚠️ **Do not "fix" a large `NOTES.md` by capping the payload here.** Bloat is a real and
  separate problem; capping would restore the silent-truncation failure this removed.
  It also installs the notepad's **credential pre-commit** when `~/.claude/hooks/secret-guard.py`
  is installed (`secret-guard.py --install-precommit <notepad>`; idempotent, silent, skipped
  under `AGENT_NOTEPAD_DRY_RUN=1`). The pre-commit re-redacts staged `sessions/*.jsonl` and
  refuses any other staged credential, naming file, line and rule, never the value. An existing
  `pre-commit` is kept as `pre-commit.local` and still runs after it.
- **Stop** — append deterministic journal entries (files touched, commands, a stop
  marker), upsert `sessions/index.json`, **mirror the journal into the memory index**,
  best-effort `git push`.
  ⛔ **Every journal entry passes through `lib/redact.sh` before it is written** — one entry
  per whole command, so a multi-line key block is seen intact. The journal is committed and
  pushed, and it used to be written unredacted: a credential typed into a command reached a
  committed journal (2026-09). If the redactor fails to load, the entry text is withheld, never written raw.
  ⚠️ Redaction is pattern-based. A bare high-entropy secret with no prefix and no keyword is
  NOT caught, so never type a credential into a command; pass it through an env var or a file.
- **UserPromptSubmit** — soft nudge to keep `NOTES.md` current (backed by the PreCompact floor).
- **PreCompact** — deterministic floor: snapshot recent intent into `PRECOMPACT.md` (gitignored,
  overwritten each time) + a journal entry before compaction. It used to be appended to the
  `NOTES.md` tail, which is exactly the part the restore cuts first.
- **SessionStart, `source=compact`** (since 2026-09-18) — a CONTINUING session gets the working
  documents, not the cold-start orientation (the compaction summary carries that): the
  `PRECOMPACT.md` floor, the newest handoff whole (up to ~7 KB), and `NOTES.md`. It is split over
  **two wirings of the same script** (`session-start.sh` and `session-start.sh --part notes`, the
  second on matcher `compact` only), because the harness caps each hook at ~10 KiB (re-measured on
  Claude Code 2.1.276: 9,900 bytes whole, 12,000 externalised; two hooks at 9,900 both whole).
  Part 2 continues `NOTES.md` from the exact byte part 1 stopped. With part 1 alone the restore is
  still complete and says what it did not carry. Pair: Tier 1 `hooks/context-budget.py` now says
  *checkpoint, then continue* instead of *hand off and /clear*.
- **SessionStart, `source=startup|resume|clear`** — the COLD restore: the orientation block, the
  newest handoff (≤4,096 bytes), `DIGEST.md`, the manifest digest, then `NOTES.md` LAST with
  whatever the budget left — a reserved floor of 1,200 bytes.
  ⛔ **SPLIT IN TWO SINCE 2026-09-20, and until then this path was the starved one.** The
  compaction restore got its second hook in 2026-09-18 and the cold path did not, so on a real
  28,359-byte `NOTES.md` a compaction restored **45.6%** and a `/clear` restored **4.6%** — and
  `/clear` is the path this skill itself recommends for a full window. The second wiring is
  `session-start.sh --part cold-notes` on matcher `startup|resume|clear`.
  ⚠️ **It starts at the floor part 1 GUARANTEES, not at where part 1 actually stopped.** The two
  hooks run in PARALLEL, so part 2 cannot observe part 1's cut; part 1's slice is ≥ the 1,200-byte
  reserve and sometimes much more. So the first bytes of part 2 may REPEAT part 1, and that is the
  deliberate choice: **overlap costs a kilobyte, a gap is NOTES.md that no hook delivered and
  nothing announced.**
  ⚠️ **It is a new `--part` NAME rather than a widened matcher on `--part notes`, and that is
  load-bearing.** `wire-settings.py` merges hooks add-only, keyed by `<file> --part <name>`: a
  matcher changed on an entry that is already wired is never applied, and the entry still reads as
  wired. A widened matcher would have shipped, pinned, installed and done nothing.
  ⚠️ **This wiring has THREE homes** — `plugin/install.sh`, `plugin/.claude-plugin/plugin.json`
  and the kit's `starter-kit/instance/boot-kit/settings.template.json`. A machine gets whichever
  route installed it, so an entry added to one and forgotten in another is a hook that runs for
  part of the fleet, with every "is it wired?" check green on both.
- **PreToolUse(Bash)** — the **commit gate** (ships in the *notepad's* `.claude/settings.json`,
  arms only in notepad sessions): blocks *agent* `git -C <code-repo> commit`s that drift
  from that repo's df-context-store.

## Install

```bash
# from the plugin dir; installs to the STABLE path ~/.claude/hooks/agent-notepad/,
# merges the four user-level Notes hooks into ~/.claude/settings.json (idempotent),
# installs this skill, and UNWIRES handoff-auto (files kept — reversible).
plugin/install.sh                 # targets $HOME
plugin/install.sh --target DIR    # targets DIR (used by the test harness against a temp HOME)
```

The installer backs up `settings.json` before editing it. To reverse: restore the backup
and re-wire handoff-auto. As a Claude Code plugin, the four Notes hooks are declared in
`plugin/.claude-plugin/plugin.json` via `${CLAUDE_PLUGIN_ROOT}`.

## A day in the life

1. `/scope-init proj-arbbot` — creates the notepad repo, interviews for objective +
   in-scope code repos, warm-starts `NOTES.md`, derives the memory wing (`proj`).
2. SessionStart auto-loads `NOTES.md` + `DIGEST.md`; you resume from state instead of
   re-deriving it. You work across the manifest's repos via absolute paths.
3. As you go, `NOTES.md` stays fresh (nudged each turn); durable code-anchored learnings
   go to each repo's `FINDINGS.md`/`DECISIONS.md` (df-context-store), not here.
4. You `git -C /abs/code-repo commit` — the commit gate checks it against that repo's
   store; a drifting commit is blocked with a fix hint, a compliant one passes.
5. On Stop, the journal appends + mirrors into the memory index; a background digest build
   queries the `proj` wing so a *sibling* objective's recent activity shows up in `DIGEST.md`.
6. Context fills → PreCompact writes the floor. You `/clear` instead of `/compact`; the
   next session rehydrates goal + next-action from `NOTES.md` alone.
7. At a real milestone, `/handoff` writes `handoffs/<date>-<topic>.md` and forces a push.

## Routing (where does this note go?)

Ephemeral task progress → `NOTES.md`. Durable + code-anchored + single-repo → that repo's
`FINDINGS`/`DECISIONS`. Cross-scope episodic (same prefix) → the memory index (mirror +
digest). Deliberate handoff → `handoffs/` + remote. Distilled/canonical → the curated store.

### Publishing a handoff commits the POINTER with the DOCUMENT

`lib/publish-handoff.sh` stages `NOTES.md` and `DIGEST.md` alongside the handoff file, so
the refreshed Notes land in the same commit. This is not tidiness. SessionStart injects
`NOTES.md` and only a **pointer** to the newest handoff — so a cold reader told the Notes
are current has no reason to open the handoff at all. Committing the document without the
pointer keeps the artifact and loses the only route to it, which is exactly what this tier
exists to prevent. Measured twice on 2026-09-04, on two machines, as ` M NOTES.md` left in
the working tree after the publisher had exited 0.

⚠️ **It stages those two files and nothing else — deliberately not `add -A`.** A notepad
also holds a manifest, a charter and session journals that other machinery writes on its
own schedule; sweeping them in publishes a half-written record from a different tier under
this one's commit message.

⛔ **It refuses a call it does not understand, before writing anything.** An empty or
whitespace-only body, a body file that does not exist, or any argument beyond
`<notepad-root> <topic> [body-file]` exits 2 with no file and no commit. Measured 2026-09-19:
`--body-file <f>` was read as a body-file *name*, the body fell back to an empty stdin, and a
header-only handoff was committed and pushed with exit 0 — indistinguishable from success.

⚠️ **The commit is not best-effort; only the push is.** A flaky remote must not block a
local checkpoint, but a *rejected commit* reported as success loses the checkpoint
entirely — so a non-zero commit (other than "nothing to commit") is surfaced and returns
non-zero.

## Relationship to handoff-auto

Evolution, not coexistence: the handoff-auto machinery becomes the **Notes** tier; its
hooks are extended and the commit gate is added. The installer unwires handoff-auto
(leaving its files in place, reversible). Outside a notepad, behavior degrades to today's.

## Non-goals (v1)

No new DB/service (files are truth) · no live context-% trigger · no automatic `/clear`
(habit) · no shared mutable files · no cross-*group* auto-sharing · manual human
code-commits are not governed (agent commits only).

Files in this skill

  • DESIGN.md16.4 KB
  • SKILL.md13.5 KB
  • plugin/.claude-plugin/plugin.json2.8 KB
  • plugin/.gitignore157 B
  • plugin/hooks/commit-gate.sh16.2 KB
  • plugin/hooks/pre-compact.sh8.1 KB
  • plugin/hooks/push-gate.sh14.1 KB
  • plugin/hooks/session-start.sh69.9 KB
  • plugin/hooks/stop.sh11.1 KB
  • plugin/hooks/user-prompt.sh1.6 KB
  • plugin/install.sh13.5 KB
  • plugin/lib/merge-session-index.py4.4 KB
  • plugin/lib/notepad.sh2.2 KB
  • plugin/lib/publish-handoff.sh8.3 KB
  • plugin/lib/redact.sh2.7 KB
  • plugin/lib/snapshot.sh2 KB
  • plugin/notepad-template/.claude/settings.json1.4 KB
  • plugin/notepad-template/.gitattributes2 KB
  • plugin/notepad-template/.gitignore1.5 KB
  • plugin/notepad-template/CLAUDE.md2.1 KB

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