Browse Secure Claude Skills
Search verified agent skills and review security grades before installing · full A–Z index
- Gws Chat SendGoogle Chat: Send a message to a space.Votes: 0GitHub stars: 158
- Gws CalendarGoogle Calendar: Manage calendars and events.Votes: 0GitHub stars: 158
- ApplyFill out a job application on Greenhouse, Lever, or WorkdayVotes: 0GitHub stars: 158
- Alterlab Squidpy SpatialAnalyzes spatial transcriptomics with squidpy (1.8.x) on AnnData and SpatialData objects, routing platforms correctly: Visium spots use spatial_neighbors(coord_type='grid') and pair with deconvolution, while Xenium/MERFISH single-cell data use coord_type='generic'/Delaunay neighbors and spatialdata-io readers (xenium, visium_hd, merscope). Runs sq.gr.spatial_neighbors, nhood_enrichment, co_occurrence, spatial_autocorr (Moran's I for spatially variable genes), ripley, and ligrec. Use when the ...Votes: 0GitHub stars: 158
- Alterlab Rnaseq QuantQuantifies bulk RNA-seq transcript abundance with salmon (v1.11.4 selective alignment) and kallisto (v0.52.0, kb-python workflow), builds a decoy-aware gentrome index, runs quant with --validateMappings --gcBias -l A, then imports estimates via tximport/tximeta with a tx2gene map and hands differential expression to alterlab-pydeseq2. Warns that salmon's index format changed to SSHash (rebuild pre-v1.11.2 indices) and that 'salmon alevin' was REMOVED (single-cell now uses piscem + alevin-fry)...Votes: 0GitHub stars: 158
- Alterlab Qiime2 AmpliconRuns 16S/ITS amplicon (microbiome) analysis with the QIIME 2 amplicon distribution (2026.1; renamed to "qiime2" in 2026.4) in the correct order: manifest import, cutadapt trim-paired primer removal BEFORE dada2 denoise-paired (trunc-len chosen from the demux quality .qzv), feature-classifier classify-sklearn against a version-matched SILVA 138 or Greengenes2 classifier, and diversity core-metrics-phylogenetic — teaching the .qza/.qzv artifact-and-provenance model and the 2026.1 feature-table ...Votes: 0GitHub stars: 158
- Alterlab ProteinmpnnDesign protein sequences for a fixed backbone with ProteinMPNN (Dauparas 2022) — message-passing inverse folding that outputs sequences predicted to fold to a given structure, with fixed positions, tied/symmetric chains, amino-acid bias, and a soluble-model variant. Use when inverse-folding a backbone PDB into sequences, redesigning selected positions, imposing symmetry across chains, or generating the sequence step of a design→fold→score loop. For pocket/interface design WITH a bound ligand,...Votes: 0GitHub stars: 158
- Alterlab Nf Core SarekRuns FASTQ-to-VCF germline and somatic variant calling via the Nextflow nf-core/sarek pipeline pinned to -r 3.8.1 — builds the samplesheet.csv (patient, sex, status, sample, lane, fastq_1, fastq_2), runs bwa-mem/bwa-mem2/dragmap alignment plus GATK4 MarkDuplicates and BQSR against the GATK GRCh38 resource bundle (dbSNP, Mills/1000G indels), and selects callers — explicitly correcting that sarek defaults to Strelka when --tools is unset (pass haplotypecaller for GATK best practice or deepvaria...Votes: 0GitHub stars: 158
- Alterlab LigandmpnnDesign protein sequences around bound ligands, metals, and nucleic acids with LigandMPNN (Dauparas 2023) — inverse folding that conditions on non-protein context, so binding-pocket and metal-site residues are chosen to fit the actual ligand. Use when designing a small-molecule or metal binding pocket, redesigning residues that contact a ligand/ion/nucleic acid, or doing enzyme active-site design where the substrate matters. For backbone sequence design with NO ligand/metal context prefer alte...Votes: 0GitHub stars: 158
- Alterlab BorzoiPredict genome-wide functional genomics tracks from DNA sequence with Borzoi (Linder 2025) — a sequence-to-function model outputting RNA-seq, CAGE, ATAC, and ChIP coverage across long context, used to score non-coding and regulatory variant effects. Use when predicting functional tracks from a DNA sequence, scoring a non-coding/regulatory variant's effect on expression or chromatin, or doing in-silico mutagenesis of a locus. To LOOK UP a variant's population frequency prefer alterlab-gnomad; ...Votes: 0GitHub stars: 158
- User ReviewReviews the scripts' user-facing terminal output by running it past subagent reviewers role-playing a first-time user, then reports severity-ranked findings. Use after changing any message a user reads — end-of-run blocks, warnings, flag menus, asks, phase banners — and whenever the user asks to "review the output", "check how this reads", "run it past a user", or wants to know whether a message is understandable and actionable. The test suite traps structure; this catches copy that is confus...Votes: 0GitHub stars: 141
- WorktrunkGuidance for Worktrunk (the `wt` CLI) — git worktree management, hooks, and config. Load when editing .config/wt.toml or ~/.config/worktrunk/config.toml; adding, modifying, or debugging hooks (post-merge, post-start, pre-commit, pre-merge, post-switch, etc.); configuring commit message generation or command aliases; or troubleshooting wt behavior. Also answers general worktrunk/wt questions.Votes: 0GitHub stars: 10
- What To DemoReview notes from the past two weeks to determine what could be demoed.Votes: 0GitHub stars: 10
- Update Pr DescriptionUpdate an existing PR description with the minimum changes needed to keep it accurate after new commits have been added.Votes: 0GitHub stars: 10
- Sync OpinionsScan all markdown files in a target directory, extract opinions and the statements that support them, then generate or update an OPINIONS.md file. Use when the user says /sync-opinions, "sync opinions", "extract opinions", or wants to compile opinions from a set of documents.Votes: 0GitHub stars: 10
- Slack Resolve ThreadsGo through the Slack threads you participated in, read each one with slackx, judge whether the discussion reached a satisfactory conclusion, and mark resolved threads with a checkmark reaction so future runs skip them. Use this whenever the user wants to triage, review, clean up, or "close out" their open Slack conversations, check which of their threads still need a reply or follow-up, or asks "have all my Slack threads been resolved?" — even if they don't mention slackx by name.Votes: 0GitHub stars: 10
- Slack Kb IndividualCollect all Slack conversations a specific person participated in during a date range. Useful for performance reviews, 1:1 prep, or building a picture of someone's contributions. Outputs JSONL via the Slack API.Votes: 0GitHub stars: 10
- Slack Kb ChannelBuild or update a Slack channel knowledge base for a given month. Works for any accessible channel given its Slack channel id. Ingests threads via the Slack API and produces temporal monthly memory files.Votes: 0GitHub stars: 10
- Select IssueSelect the next issue to work on from a GitHub project's priority view, constrained to work also planned in the roadmap view. Use when the user says /select-issue, "what should I work on", "pick the next issue", or wants the next planned high-priority issue.Votes: 0GitHub stars: 10
- Review SkillsAudit a skill directory for duplicates, broken references, circular dependencies, orphaned skills, composability issues, CLI drift, and skill gaps. Use when the user says /review-skills or wants to audit their skill library.Votes: 0GitHub stars: 10