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Claude Skills by aipoch
github.com/aipoch605 skills11 installs808 views
- Volcano Plot ScriptGenerate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. Triggered when user needs visualization of gene expression data, p-value vs fold-change scatter plots, publication-ready figures for bioinformatics analysis.Votes: 0GitHub stars: 1,793
- Western Blot QuantifierAutomatically identify Western Blot gel bands, perform densitometric analysis, and calculate normalized values relative to loading controls.Votes: 0GitHub stars: 1,793
- Acronym UnpackerIntelligent medical abbreviation disambiguation tool that resolves ambiguous acronyms using clinical context, specialty-specific knowledge, and document-level semantic analysis.Votes: 0GitHub stars: 1,793
- Alphafold DbAccess over 200M protein structures from AlphaFold DB; use when you need to retrieve predicted 3D structures (PDB/mmCIF), confidence metrics (pLDDT/PAE), or protein metadata by UniProt accession.Votes: 0GitHub stars: 1,793
- ArboretoInfer gene regulatory networks (GRNs) from gene expression matrices using GRNBoost2 or GENIE3; use when analyzing bulk or single-cell RNA-seq to identify TF→target regulatory relationships.Votes: 0GitHub stars: 1,793
- Arxiv DatabaseSearch and retrieve scientific preprints from arXiv; use it when you need to find papers by keyword/author/category, fetch metadata (abstract, DOI, PDF URL), or download PDFs for offline reading.Votes: 0GitHub stars: 1,793
- Bio Ontology MapperMap unstructured biomedical text to standardized ontologies (SNOMED CT.Votes: 0GitHub stars: 1,793
- Biogrid OrcsAccesses BioGRID ORCS CRISPR screen data (organisms, screens, scores). Invoke when user needs to search CRISPR screens, get vocabulary, or retrieve gene scores.Votes: 0GitHub stars: 1,793
- Biopython EntrezUse Bio.Entrez to access NCBI databases (e.g., PubMed/GenBank) for searching, fetching summaries, and downloading records when your workflow needs to call the NCBI E-utilities API over the network.Votes: 0GitHub stars: 1,793
- Biorxiv DatabaseSearch, retrieve metadata, and download PDFs for bioRxiv preprints; use when you need to discover biology preprints by keywords/authors/date ranges and programmatically fetch their details.Votes: 0GitHub stars: 1,793
- Blockbuster Therapy PredictorComprehensive analytics tool for forecasting breakthrough therapeutic technologies by integrating multi-dimensional data sources including clinical development pipelines, intellectual property landscapes, and capital mar.Votes: 0GitHub stars: 1,793
- Brenda DatabaseProgrammatic access to the BRENDA enzyme database via the SOAP API; use when you need kinetic constants (Km, kcat, Vmax), reaction equations, enzyme properties (pH/temperature optima, stability), or enzyme discovery by EC/substrate/product.Votes: 0GitHub stars: 1,793
- Cellosaurus ApiAccess Cellosaurus database for cell line information and release data. Invoke when user asks to search cell lines, get cell line details by accession, or check database release info.Votes: 0GitHub stars: 1,793
- Cellxgene CensusProgrammatically query the CZ CELLxGENE Census (61M+ cells) when you need cross-tissue, disease, or cell-type expression data for population-scale queries and reference atlas comparisons.Votes: 0GitHub stars: 1,793
- Chea ApiAccess ChEA3 and Harmonizome ChEA data for transcription factor enrichment analysis and metadata retrieval. Use when the user needs to perform ChEA3 enrichment analysis on a gene set, get metadata about the ChEA dataset, or retrieve information about a specific transcription factor (attribute).Votes: 0GitHub stars: 1,793
- Chembl DatabaseQuery the ChEMBL database for bioactive molecules, targets, bioactivities, and approved drugs; use this when you need to filter by physicochemical properties (e.g., MW, LogP), chemical structure (SMILES), or retrieve drug mechanism information.Votes: 0GitHub stars: 1,793
- Citation Chasing MappingUse when identifying seminal papers in a research field, mapping research lineage and intellectual heritage, discovering related work through reference tracking, or finding potential collaborators through co-citation analysis. Maps citation networks to trace research evolution...Votes: 0GitHub stars: 1,793
- Citation ManagementComprehensive citation management for academic research; use when you need to discover papers (Google Scholar/PubMed), extract/verify metadata (DOI/PMID/arXiv/URL), and produce validated, clean BibTeX for manuscripts.Votes: 0GitHub stars: 1,793
- Citation NetworkBuild and visualize a citation network from a source/target CSV to identify key papers, communities, and emerging hotspots; use when you have citation pairs and need fast literature review or trend analysis.Votes: 0GitHub stars: 1,793
- Clinical Study Info ExtractorBatch extracts and verifies structured information (PMID, title, abstract, methodology, results, etc.) from clinical research literature using PMIDs. Use when the user wants to extract details from specific PMIDs.Votes: 0GitHub stars: 1,793
- Clinical Trial FinderFind clinical trials for a gene, variant, or condition from ClinicalTrials.gov + EUCTR, with FHIR R4 outputVotes: 0GitHub stars: 1,793
- Clinicaltrials DatabaseQuery ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.Votes: 0GitHub stars: 1,793
- Clinicaltrials DbQuery the ClinicalTrials.gov API v2 to search for clinical trials, retrieve detailed study protocols, and analyze recruitment status; use when you need to find trials by condition/drug, export results, or verify study details by NCT ID.Votes: 0GitHub stars: 1,793
- Clinicaltrials Gov ParserMonitor and summarize competitor clinical trial status changes from ClinicalTrials.gov.Votes: 0GitHub stars: 1,793
- Clinpgx DatabaseAccess ClinPGx pharmacogenomics data (successor to PharmGKB) when you need to query gene-drug interactions, CPIC guidelines, allele functions, and drug-label PGx content for precision medicine and genotype-guided dosing.Votes: 0GitHub stars: 1,793
- Clinvar DatabaseUtilities for querying the NCBI ClinVar database to retrieve variant records, clinical significance, and phenotype relationships; use when searching variants by gene/condition/significance, interpreting Pathogenic/Benign/VUS classifications, or annotating VCF files with ClinVar annotations.Votes: 0GitHub stars: 1,793
- Comparison Table GenAuto-generates comparison tables for concepts, drugs, or study results.Votes: 0GitHub stars: 1,793
- Competitor Trial MonitorMonitor competitor clinical trial progress and alert on market risks.Votes: 0GitHub stars: 1,793
- Concept ExplainerUses analogies to explain complex medical concepts in accessible terms.Votes: 0GitHub stars: 1,793
- Cosmic DatabaseAccess COSMIC to download mutation datasets, query Cancer Gene Census, and retrieve mutational signatures when your genomic analysis requires curated somatic mutation resources.Votes: 0GitHub stars: 1,793
- Cross Disciplinary Bridge FinderUse when identifying collaboration opportunities across fields, finding experts in complementary disciplines, translating methodologies between scientific domains, or building interdisciplinary research teams. Identifies synergies between scientific disciplines, matches researchers with complementary expertise, and facilitates cross-domain collaborations. Supports interdisciplinary grant applications and innovative research team formation.Votes: 0GitHub stars: 1,793
- Crossref DatabaseAccess CrossRef metadata for scholarly works; use when you need to resolve a DOI or search CrossRef to retrieve bibliographic details, citation/reference counts, or funder information for research and citation management.Votes: 0GitHub stars: 1,793
- Ctd ApiAccesses Comparative Toxicogenomics Database (CTD) for chemical, gene, disease, and pathway interaction data. Invoke when user needs to query CTD, retrieve toxicogenomics data, or investigate chemical-disease relationships.Votes: 0GitHub stars: 1,793
- Diagnostic Study Quality Assessment Quadas 2Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. Use when Claude needs to assess the quality, risk of bias, or applicability of diagnostic accuracy studies (e.g., "Assess this paper using QUADAS-2").Votes: 0GitHub stars: 1,793
- Diffdock Molecular DockingDiffusion-based molecular docking to predict 3D ligand–protein binding poses (blind docking) with confidence scoring; use when you need pose prediction for drug discovery or virtual screening.Votes: 0GitHub stars: 1,793
- Drug Interaction CheckerCheck for interactions between multiple medications, including severity classification and mechanism explanations.Votes: 0GitHub stars: 1,793
- Drugbank DatabaseProgrammatic access to DrugBank drug and target data; use when you need to download, parse, and analyze DrugBank XML for properties, interactions, pathways, and pharmacology.Votes: 0GitHub stars: 1,793
- Emerging Topic ScoutA real-time monitoring system for identifying "incubation period" research hotspots in biological and medical sciences before they are defined by mainstream journals.Votes: 0GitHub stars: 1,793
- Ena DatabaseAccess the European Nucleotide Archive (ENA) via REST APIs and FTP/Aspera to search and retrieve sequences, raw reads (FASTQ), assemblies, and metadata when you have accession IDs or need metadata-driven discovery for genomics pipelines.Votes: 0GitHub stars: 1,793
- Encode ApiAccess the ENCODE Project REST API to search for and retrieve biological data (biosamples, experiments, etc.). Use this skill when the user needs to query ENCODE data, search by keywords, or retrieve specific objects by accession ID.Votes: 0GitHub stars: 1,793
- Encori ApiAccess ENCORI (StarBase) database for miRNA-target, RNA-RNA, and other regulatory data. Invoke when user asks to search ENCORI or retrieve regulatory interactions.Votes: 0GitHub stars: 1,793
- Ensembl DatabaseAccess Ensembl REST API for vertebrate genomic data; use when you need gene/ID lookups, sequence retrieval, variant effect prediction (VEP), or homology/assembly coordinate mapping.Votes: 0GitHub stars: 1,793
- Fda DatabaseQuery the openFDA API to retrieve FDA regulatory datasets (drugs, devices, adverse events, recalls, submissions, UNII) when you need programmatic safety/regulatory evidence for analysis or research.Votes: 0GitHub stars: 1,793
- Fda Guideline SearchSearch FDA industry guidelines by therapeutic area or topic.Votes: 0GitHub stars: 1,793
- Funding Trend ForecasterAnalyze funding abstracts and project metadata to identify topic shifts and forecast near-term grant priorities.Votes: 0GitHub stars: 1,793
- Gene DatabaseQuery the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you need to search genes by symbol/ID and retrieve annotations (RefSeq, GO, location, phenotype) for single or batch gene lists.Votes: 0GitHub stars: 1,793
- Gene InfoRetrieves comprehensive gene information including PubMed publication counts, NCBI summaries, and Ensembl transcript data. Supports batch processing and file input. Invoke when the user asks for gene details, publication statistics, or needs to analyze a list of genes.Votes: 0GitHub stars: 1,793
- Geo Search ApiSearch for gene expression DataSets and Profiles in the NCBI GEO database. Use this skill when the user wants to find microarray, RNA-seq, or other genomic data by keywords, organism, author, or specific fields.Votes: 0GitHub stars: 1,793
- GgetUnified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by gene/protein IDs or keywords.Votes: 0GitHub stars: 1,793
- Grant Funding ScoutNIH funding trend analysis to identify high-priority research areas.Votes: 0GitHub stars: 1,793