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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab7,765 skills0 installs8,278 views
- Targeted Feature Extraction From LcmsUse when you have a curated target list of m/z values, retention times,Votes: 0GitHub stars: 15
- Targeted Metabolite Detection Parameter OptimizationUse when when you have centroided .mzML LC–MS runs and a target listVotes: 0GitHub stars: 15
- Targeted Metabolite ExtractionUse when you have centroided LC-MS data (.mzML format) and a curatedVotes: 0GitHub stars: 15
- Targeted Metabolite Screening Mode ConfigurationUse when beginning a targeted LC–MS metabolomics or lipidomics studyVotes: 0GitHub stars: 15
- Targeted Metabolomics Feature ElaborationUse when you have targeted metabolomics data with peak area intensitiesVotes: 0GitHub stars: 15
- Targeted Peak Detection And IntegrationUse when you have centroided LC–MS data in .mzML format, a validatedVotes: 0GitHub stars: 15
- Targeted Peak Detection Screening And ValidationUse when you have centroided mzML LC–MS data, a curated list of targetVotes: 0GitHub stars: 15
- Targeted Peak Extraction Ms1Use when you have raw MS data in a supported instrument format (AgilentVotes: 0GitHub stars: 15
- Targeted Peak Integration ConfigurationUse when when performing targeted quantification of known compounds inVotes: 0GitHub stars: 15
- Targeted Proteomics Feature FilteringUse when you have loaded transition group chromatogram data from sqMassVotes: 0GitHub stars: 15
- Targeted Transition List GenerationUse when you have a set of lipid targets defined by species name, acylVotes: 0GitHub stars: 15
- Tautomer StandardizationUse when ingesting raw SMILES strings from curated structure inventoriesVotes: 0GitHub stars: 15
- Taxon Identifier Resolution ApiUse when you have a metadata table with raw, non-standardized taxonomyVotes: 0GitHub stars: 15
- Taxonomic Classification MergingUse when you have a GNPS DBResult file with spectral library matchesVotes: 0GitHub stars: 15
- Taxonomic Metadata IntegrationUse when after organism name cleaning and standardization (via 1_cleaningOriginal.RVotes: 0GitHub stars: 15
- Taxonomic Nomenclature Normalization And ValidationUse when you have organism names originating from 31+ heterogeneous naturalVotes: 0GitHub stars: 15
- Taxonomic Weighting In AnnotationUse when you have a feature table with candidate metabolite annotationsVotes: 0GitHub stars: 15
- Taxonomy Classification EvaluationUse when you have a pre-trained model (or candidate models) and needVotes: 0GitHub stars: 15
- Taxonomy Database QueryingUse when a paired omics project record contains a genome identifier (e.g.,Votes: 0GitHub stars: 15
- Taxonomy Metadata ExtractionUse when you have executed a spectrum search against one or more domain-specificVotes: 0GitHub stars: 15
- Taxonomy String NormalizationUse when when preparing a metadata table (TSV format with species, genus,Votes: 0GitHub stars: 15
- Tcn Encoder Input PreprocessingUse when when reproducing or auditing FIDDLE's formula prediction pipeline,Votes: 0GitHub stars: 15
- Technical Heterogeneity RemovalUse when your metabolomics matrix (log2-scaled, samples × features inVotes: 0GitHub stars: 15
- Technical Replicate Reproducibility AssessmentUse when you have tandem MS data with technical replicates and need toVotes: 0GitHub stars: 15
- Technical Replicate Signal ModelingUse when your LCMS metabolomics dataset exhibits run-order-dependentVotes: 0GitHub stars: 15
- Technical Specification TabulationUse when when you need to verify whether a specific mass spectrometryVotes: 0GitHub stars: 15
- Technical Variation AssessmentUse when when you have a preprocessed metabolomics matrix (log2-scaled,Votes: 0GitHub stars: 15
- Technical Variation Removal In Lcms DataUse when after merging feature tables from non-targeted LC-MS/MS dataVotes: 0GitHub stars: 15
- Temporal Profile Correlation AnalysisUse when you have time-resolved direct injection mass spectrometry dataVotes: 0GitHub stars: 15
- Temporal Signal Drift Detection And AdjustmentUse when raw MS quantification data (feature-by-sample intensity matrix)Votes: 0GitHub stars: 15
- Tensor Dimension Alignment And BroadcastingUse when when implementing a multi-task deep learning model that predictsVotes: 0GitHub stars: 15
- Tensor Embedding DesignUse when when you need to represent discrete chemical formulae (e.Votes: 0GitHub stars: 15
- Tensor Encoding Deep LearningUse when when you have validated SMILES strings or RDKit molecule objectsVotes: 0GitHub stars: 15
- Tensor Operation Element Wise ProductUse when you have two embedding tensors of identical shape (e.g., bothVotes: 0GitHub stars: 15
- Tensor Preprocessing NormalizationUse when when you have raw MS/MS spectral data in the form of intensityVotes: 0GitHub stars: 15
- Tensor Shape Validation And Numerical Correctness CheckingUse when after implementing a shared-weight ResNet18 encoder module butVotes: 0GitHub stars: 15
- Tensor Shape Validation Through Forward PassUse when after assembling a Graphormer backbone with DGL molecular graphVotes: 0GitHub stars: 15
- Tensorflow Cpu Runtime Parameter TuningUse when deploying Mass2SMILES on a TensorFlow-CPU build and you needVotes: 0GitHub stars: 15
- Tensorflow Hdf5 SerializationUse when when you have acquired Keras models (via get_models.sh or similarVotes: 0GitHub stars: 15
- Tensorflow Model ConversionUse when you have downloaded pre-trained Keras models and need to prepareVotes: 0GitHub stars: 15
- Tensorflow Model Layer InspectionUse when after converting or downloading a pre-trained Keras model toVotes: 0GitHub stars: 15
- Tensorflow Model Metadata InspectionUse when deploying a TensorFlow model through TensorFlow Serving andVotes: 0GitHub stars: 15
- Tensorflow Serving Deployment'Use when you have trained Keras models that need to be served as microservicesVotes: 0GitHub stars: 15
- Tensorflow Serving Endpoint IntegrationUse when you have nuclear magnetic resonance (NMR) peak data (1H andVotes: 0GitHub stars: 15
- Tensorflow Serving Endpoint QueryingUse when you have deployed a TensorFlow model via TensorFlow ServingVotes: 0GitHub stars: 15
- Tensorflow Serving Layer InspectionUse when after deploying a TensorFlow model via TensorFlow Serving (e.Votes: 0GitHub stars: 15
- Test Coverage For Edge CasesUse when integrating a new metadata validation step into a conversionVotes: 0GitHub stars: 15
- Test Driven Database DevelopmentUse when when you have an existing tool or library with file-based storageVotes: 0GitHub stars: 15
- Test Driven Development Validation'Use when when you have implemented or modified a bioinformatic fingerprintVotes: 0GitHub stars: 15
- Test Output Parsing And Status ValidationUse when you need to verify whether a GitHub Actions workflow badge (e.g.,Votes: 0GitHub stars: 15