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Claude Skills by InternScience
github.com/InternScience485 skills3 installs298 views
- Multispecies Gene AnalysisMulti-Species Gene Analysis - Analyze gene across species: Ensembl homologs, NCBI orthologs, cross-species STRING similarity, and taxonomy. Use this skill for comparative genomics tasks involving get homology symbol get gene orthologs get best similarity hits between species get taxonomy. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Ncbi Gene Deep DiveNCBI Gene Deep Dive - Deep dive into NCBI gene: metadata, dataset report, product report, orthologs, and gene links. Use this skill for gene biology tasks involving get gene metadata by gene name get gene dataset report by id get gene product report by id get gene orthologs get gene links by id. Combines 5 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Ncbi Gene RetrievalRetrieve gene information from NCBI Gene database by gene IDs to obtain genomic details, function, and expression data.Votes: 0GitHub stars: 170
- Organism ClassificationOrganism Classification & Database - Classify organism: NCBI taxonomy, Ensembl taxonomy, ChEMBL organisms, and genome info. Use this skill for taxonomy tasks involving get taxonomy get taxonomy id get organism by id get genome dataset report by taxon. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Phenotype By Hpo IdRetrieve phenotype information from Monarch Initiative using HPO (Human Phenotype Ontology) IDs to understand disease manifestations.Votes: 0GitHub stars: 170
- Population GeneticsPopulation Genetics Analysis - Analyze population genetics: Ensembl variation populations, linkage disequilibrium, and variant frequency data. Use this skill for population genetics tasks involving get info variation populations get ld get variation get variant recoder. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Rare Disease GeneticsRare Disease Genetic Analysis - Analyze rare disease genetics: Monarch phenotype-disease mapping, ClinVar variants, NCBI gene data, and OpenTargets. Use this skill for rare disease genetics tasks involving get HPO ID by phenotype get joint associated diseases by HPO ID list clinvar search get associated targets by disease efoId. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Regulatory Region AnalysisRegulatory Region Analysis - Analyze regulatory regions: get overlapping features, binding matrix, sequence, and phenotype associations. Use this skill for epigenomics tasks involving get overlap region get species binding matrix get sequence get phenotype region. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Snp Functional AnalysisSNP Functional Impact Analysis - Analyze SNP function: VEP prediction, variation details, phenotype association, and literature evidence. Use this skill for functional genomics tasks involving get vep id get variation get phenotype accession pubmed search. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Tcga Gene ExpressionRetrieve gene expression data from TCGA (The Cancer Genome Atlas) to analyze cancer-specific expression patterns.Votes: 0GitHub stars: 170
- Tissue Specific AnalysisTissue-Specific Expression Analysis - Analyze tissue-specific expression: ChEMBL tissue data, TCGA cancer expression, Ensembl gene info, and NCBI gene data. Use this skill for tissue biology tasks involving get tissue by id get gene expression across cancers get lookup symbol get gene metadata by gene name. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Transcriptome AnalysisTranscriptome Analysis Pipeline - Analyze transcriptome: Ensembl transcript lookup, sequence retrieval, haplotype analysis, and UCSC track data. Use this skill for transcriptomics tasks involving get lookup id get sequence id get transcript haplotypes get track data. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Ucsc Genome ExplorationUCSC Genome Browser Exploration - Explore genome via UCSC: list genomes, list tracks, get sequence, get track data, and cytoband info. Use this skill for genomics tasks involving list genomes list tracks get sequence get track data get cytoband. Combines 5 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Variant PathogenicityVariant Pathogenicity Assessment - Assess variant pathogenicity: Ensembl VEP prediction, ClinVar lookup, variation details, and gene phenotype associations. Use this skill for clinical genetics tasks involving get vep hgvs clinvar search get variation get phenotype gene. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Virus GenomicsVirus Genomics Analysis - Analyze virus genomics: NCBI virus dataset, annotation, taxonomy, and literature search. Use this skill for virology tasks involving get virus dataset report get virus annotation report get taxonomy search literature. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Biomedical Web SearchSearch biomedical literature and web content using Tavily search engine for research and clinical information.Votes: 0GitHub stars: 170
- Daily Paper Push Writing(Wo Image)A research/push notification writing guide. Use this skill with high priority when users ask you to perform tasks like daily paper push.Votes: 0GitHub stars: 170
- Daily Paper Push WritingA research/push notification writing guide. Use this skill with high priority when users ask you to perform tasks like daily paper push.Votes: 0GitHub stars: 170
- Pubmed Article SearchSearch PubMed database for scientific articles and publications to retrieve biomedical literature.Votes: 0GitHub stars: 170
- Scientific Literature SearchSearch scientific literature and research papers using FlowSearch to find relevant academic articles and publications.Votes: 0GitHub stars: 170
- Admet Druglikeness ReportADMET & Drug-Likeness Report - Generate comprehensive ADMET and drug-likeness report: molecular properties, H-bond analysis, hydrophobicity, topology, and ADMET prediction. Use this skill for medicinal chemistry tasks involving calculate mol basic info calculate mol hbond calculate mol hydrophobicity calculate mol topology pred molecule admet. Combines 5 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Affinity MaturationAffinity Maturation Pipeline - Affinity maturation: compute binding affinity, predict mutations, compute hydrophilicity, and predict drug-target interaction. Use this skill for antibody engineering tasks involving ComputeAffinityCalculator zero shot sequence prediction ComputeHydrophilicity PredictDrugTargetInteraction. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Alanine Scanning PipelineAlanine Scanning Mutagenesis Pipeline - Alanine scanning: design scan, compute properties for each mutant, predict interactions, and compare. Use this skill for protein biochemistry tasks involving AlanineScanningDesigner ComputeProtPara PredictDrugTargetInteraction calculate protein sequence properties. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Antibody Drug DevelopmentAntibody Drug Development - Develop antibody drug: target protein analysis, biotherapeutic lookup, protein properties, and interaction prediction. Use this skill for biologics tasks involving get uniprotkb entry by accession get biotherapeutic by name ComputeProtPara ComputeHydrophilicity. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Atc Drug ClassificationATC Drug Classification Lookup - Look up drug in ATC classification: ChEMBL ATC class, FDA drug info, PubChem compound, and mechanism of action. Use this skill for pharmacology tasks involving get atc class by level5 get mechanism of action by drug name get compound by name get drug by name. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Boltz2 Binding AffinityPredict protein-ligand binding affinity using Boltz-2 model to assess molecular interactions and binding probability for drug discovery.Votes: 0GitHub stars: 170
- Cancer Therapy DesignCancer Therapy Design - Design cancer therapy: identify targets, find drugs, check safety, and analyze differential expression. Use this skill for oncology tasks involving get associated targets by disease efoId get associated drugs by target name get adverse reactions by drug name tcga differential expression analysis. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Chemical Safety AssessmentChemical Safety Assessment - Assess chemical safety: PubChem compound info, FDA drug data, ADMET prediction, and structural alerts from ChEMBL. Use this skill for chemical safety tasks involving get general info by compound name get warnings and cautions by drug name pred molecule admet get compound structural alert. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Clinical Pharmacology ReportClinical Pharmacology Report - Generate clinical pharmacology report: PK, PD, mechanism, drug interactions, and special populations. Use this skill for clinical pharmacology tasks involving get pharmacokinetics by drug name get pharmacodynamics by drug name get mechanism of action by drug name get drug interactions by drug name get geriatric use info by drug name. Combines 5 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Clinical Trial Drug ProfileClinical Trial Drug Profiling - Profile drug for clinical trials: FDA clinical studies, contraindications, pregnancy info, and geriatric use. Use this skill for clinical research tasks involving get clinical studies info by drug name get contraindications by drug name get pregnancy effects info by drug name get geriatric use info by drug name. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Combinatorial ChemistryCombinatorial Chemistry Library Design - Design combinatorial library: validate core SMILES, generate variants, compute properties, and predict ADMET for library. Use this skill for combinatorial chemistry tasks involving is valid smiles calculate mol basic info calculate mol drug chemistry pred molecule admet. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Comparative Drug AnalysisComparative Drug Analysis - Compare drugs: structure analysis, PubChem data, FDA safety, and ChEMBL bioactivity. Use this skill for comparative pharmacology tasks involving ChemicalStructureAnalyzer get compound by name get adverse reactions by drug name search activity. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Compound To Drug PipelineCompound-to-Drug Analysis Pipeline - Full compound-to-drug pipeline: name-to-SMILES conversion, structure analysis, drug-likeness, and FDA drug lookup. Use this skill for drug development tasks involving NameToSMILES ChemicalStructureAnalyzer calculate mol drug chemistry get drug by name. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Disease Compound PipelineDisease-Specific Compound Screening - Screen compounds for disease: get DLEPS score for disease relevance, predict ADMET, and check drug-likeness. Use this skill for drug discovery tasks involving calculate dleps score pred molecule admet calculate mol drug chemistry get compound by name. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Disease Drug LandscapeDisease-Drug Landscape Analysis - Map the drug landscape for a disease: OpenTargets disease drugs, FDA indications, and clinical studies. Use this skill for drug discovery tasks involving get associated drugs by target name get drug names by indication get clinical studies info by drug name. Combines 3 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Disease Knowledge GraphDisease Knowledge Graph - Build disease knowledge graph: OpenTargets targets, drugs, publications, and phenotypes. Use this skill for disease informatics tasks involving get associated targets by disease efoId get associated drugs by target name get publications by drug name get associated phenotypes by disease efoId. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Drug Indication MappingDrug-Indication Mapping - Map drug indications: ChEMBL drug indications, FDA indications, OpenTargets drug associations, and literature. Use this skill for clinical informatics tasks involving get drug indication by id get indications by drug name get associated drugs by target name pubmed search. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Drug Interaction CheckerDrug-Drug Interaction Checker - Check interactions between multiple drugs using FDA interaction data, PubChem compound info, and ChEMBL target overlap analysis. Use this skill for clinical pharmacology tasks involving get drug interactions by drug name get compound by name get target by name. Combines 3 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Drug Metabolism StudyDrug Metabolism Study - Study drug metabolism: FDA metabolism data, ChEMBL metabolism records, PubChem compound data, and clinical pharmacology. Use this skill for drug metabolism tasks involving get metabolism by id get pharmacokinetics by drug name get compound by name get clinical pharmacology by drug name. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Drug Repurposing ScreenDrug Repurposing Screening - Screen existing drugs for new indications by querying FDA indications, ChEMBL mechanisms, and OpenTargets drug-disease associations. Use this skill for drug discovery tasks involving get indications by drug name get mechanism of action by drug name get drug by name get associated drugs by target name. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Drug Safety ProfileComprehensive Drug Safety Profile - Build a complete drug safety profile by combining FDA adverse reactions, boxed warnings, drug interactions, and contraindications. Use this skill for pharmacology tasks involving get adverse reactions by drug name get boxed warning info by drug name get drug interactions by drug name get contraindications by drug name. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Drug Screening DockingComprehensive drug screening pipeline from molecular filtering through QED/ADMET criteria to protein-ligand docking, identifying promising drug candidates.Votes: 0GitHub stars: 170
- Drug Target IdentificationDrug Target Identification Pipeline - Identify drug targets for a disease by querying OpenTargets for associated targets, then retrieve detailed target info from ChEMBL and protein data from UniProt. Use this skill for drug discovery tasks involving get associated targets by disease efoId get target by name get general info by protein or gene name. Combines 3 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Drug Target StructureDrug-Target Structural Biology - Integrate drug and target structure: get drug from ChEMBL, target structure from PDB, dock them, and predict ADMET. Use this skill for structural pharmacology tasks involving get drug by name retrieve protein data by pdbcode quick molecule docking pred molecule admet. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Drug Warning ReportDrug Warning Intelligence Report - Generate drug warning report: ChEMBL drug warnings, FDA boxed warnings, adverse reactions, and environmental warnings. Use this skill for pharmacovigilance tasks involving get drug warning by id get boxed warning info by drug name get adverse reactions by drug name get environmental warning by drug name. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Drugsda AdmetPredict the ADMET (absorption, distribution, metabolism, excretion, and toxicity) properties of the input molecules.Votes: 0GitHub stars: 170
- Drugsda Compound RetrieveRetrieve SMILES strings from PubChem using compound names.Votes: 0GitHub stars: 170
- Drugsda Data ValidCheck if the input protein sequence or molecule SMILES string is valid.Votes: 0GitHub stars: 170
- Drugsda Denovo SamplingGenerate new molecules de novo.Votes: 0GitHub stars: 170
- Drugsda DlepsCalculate disease reversal scores for the provided molecules relative to a specific disease.Votes: 0GitHub stars: 170