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Claude Skills by stanfish06
github.com/stanfish061,787 skills13 installs1,944 views
- Complexa SetupFirst-time setup, environment configuration, and model-weight installation for Proteina-Complexa. Reach for this skill whenever the user says "set up complexa", "install complexa", "configure my environment file", "first-time setup", "what models do I have installed", "what's in my environment file", "download model weights", "download Complexa / AF2 / RF3 / ProteinMPNN / LigandMPNN / ESM2 / ESMFold checkpoints", "preflight my GPU", "verify environment", "complexa init", "complexa download", ...Votes: 0GitHub stars: 8
- Complexa SlurmUse when launching Proteina-Complexa jobs on a remote SLURM cluster, including binder search, LaProteina design or training, multi-node runs, sbatch, remote GPU jobs, Hydra sweeps, rsync-to-cluster workflows, `--on-cluster`, grizzly or polar, and singleton requeue chains.Votes: 0GitHub stars: 8
- Complexa SweepUse this skill whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over generation/reward/evaluation knobs, or any "compare configurations" workflow. Trigger phrases include "sweep beam width", "sweep nsteps", "hyperparameter sweep", "parameter scan", "scan beam_width and temperature", "compare configurations", "find the best generation params", "what's the optimal nsteps", "Pareto search for binder ...Votes: 0GitHub stars: 8
- Complexa TargetUse this skill whenever the user wants to add, register, edit, list, show, or validate a Proteina-Complexa design target for any pipeline — protein binder (default), ligand binder, or AME / enzyme scaffolding. Triggers include "add a target", "define a new target for binder design", "register a hotspot", "set up a PDL1 binder target", "ligand binder pocket", "SMILES target", "AME task", "enzyme motif", "M0024_1nzy", "complexa target add", "complexa target show", "configure target X", "what ta...Votes: 0GitHub stars: 8
- Composites EngineerExpert-thinking profile for Composites Engineer (design / manufacturing / test / certification): Reasons from CLT/ABD laminate mechanics, Halpin–Tsai micromechanics, and CMH-17/NCAMP allowables through autoclave/OOA/RTM process control, ASTM D30 mechanical qualification, ultrasonic C-scan and CAI damage tolerance while treating fiber waviness, void content, under-cure, and quasi-isotropic strength traps as...Votes: 0GitHub stars: 8
- CompsTrading comparables analysis with peer multiples and implied valuationVotes: 0GitHub stars: 8
- Computational ChemistExpert-thinking profile for Computational Chemist (computational / dry / quantum chemistry & molecular simulation): Reasons from Kohn–Sham DFT, def2/D4 functional selection, and conformer ensembles through VASP/Gaussian/ORCA, AMBER/GROMACS MD, CREST/CENSO sampling, ONIOM/QM/MM electrostatic embedding, GMTKN55 validation, and SCF convergence escalation while treating B3LYP/6-31G*, BSSE, link-atom artifacts, and force-field mismatch...Votes: 0GitHub stars: 8
- Computational LinguistExpert-thinking profile for Computational Linguist (computational / corpus & annotation / parsing & semantics): Reasons from UD/PTB formalisms, validate.py/eval.py (LAS/MLAS/ELAS), and evalb .prm settings through Stanza/UDPipe pipelines, PropBank/FrameNet/AMR/UMR layers, IAA (κ, Krippendorff α), CONDA contamination checks, and ARR reproducibility while treating tokenizer mismatch, oracle inflation, train–test leakage, and...Votes: 0GitHub stars: 8
- Computational NeuroscientistExpert-thinking profile for Computational Neuroscientist (computational / dry / modeling & neural data analysis): Reasons from encoding/decoding, GLM/LNP spike-train likelihood, mean-field E-I balance, and neural manifolds through NEST/Brian/NEURON/BMTK, GPFA/LFADS, Brain-Score alignment, and trained-RNN reverse engineering while treating spike-sorting contamination, model non-identifiability, nested-CV leakage, and...Votes: 0GitHub stars: 8
- Computational PhysicistExpert-thinking profile for Computational Physicist (computational / dry / HPC simulation): Reasons from governing equations, discretization, and HPC scaling through code/solution verification, DFT, MD, Monte Carlo, and FEM/FVM workflows (VASP, LAMMPS, COMSOL, OpenFOAM, QE).Votes: 0GitHub stars: 8
- Computational ScientistExpert-thinking profile for Computational Scientist (computational / dry / simulation, UQ, and reproducible workflows): Reasons from Roache code/solution verification and ASME V&V 10/20/40 credibility through MMS/GCI, UQ ensembles, and Snakemake/Nextflow/CWL pipelines with conda-lock/Apptainer provenance while treating environment drift, workflow cache staleness, and validation-vs-calibration conflation as first-class failure modes.Votes: 0GitHub stars: 8
- Computational Social ScientistExpert-thinking profile for Computational Social Scientist (digital-trace / network science / text-as-data / causal inference (DiD, IV, RDD) / field & survey experiments): Reasons from social mechanisms, measurement validity, and sampling frames through DAGs, fixed-effects and IV/DiD/RDD designs, ERGM/SAOM network models, and human-audited text classifiers while treating unobserved homophily, network interference and SUTVA violations, platform-driven selection, bot contamination, and...Votes: 0GitHub stars: 8
- Computer Architecture ResearcherExpert-thinking profile for Computer Architecture Researcher (computational / simulation / architecture evaluation): Reasons from ISA semantics, AMAT/CPI, MESI coherence, and branch prediction through gem5/SPEC/MLPerf evaluation, Amdahl and roofline discipline, TPU/GPU dataflow accelerators, DVFS/EDP, and Spectre/Meltdown mitigation overhead at ISCA/MICRO/HPCA rigor.Votes: 0GitHub stars: 8
- Computer Graphics ResearcherExpert-thinking profile for Computer Graphics Researcher (computational / offline & real-time rendering / neural graphics): Reasons from the rendering equation and Monte Carlo MIS through Mitsuba/Embree/Blender, Vulkan/DXR real-time stacks, BRDF/BSDF validation, SIGGRAPH/EG reporting, NeRF/3DGS pitfalls, OCIO color pipelines, OIDN denoising bias, and mesh/UV artifact diagnosis while treating train–display gamma errors and unequal-spp...Votes: 0GitHub stars: 8
- Computer Hardware EngineerExpert-thinking profile for Computer Hardware Engineer (RTL / microarchitecture / physical design / verification): Reasons from CPI/AMAT and MESI/MOESI coherence through SystemVerilog RTL, PrimeTime/Design Compiler/Innovus signoff, PCIe LTSSM/TLP, SVA formal, and clock-gating power while treating CDC metastability, false-path abuse, X-optimism, and coherency traffic as first-class failure modes.Votes: 0GitHub stars: 8
- Computer ScientistExpert-thinking profile for Computer Scientist (theory + systems / algorithms & complexity / distributed data / formal methods (TLA+, Coq) / security (STRIDE, OWASP ASVS)): Reasons from computational models, abstraction contracts, invariants, and measurable complexity through CLRS-grade algorithm analysis, impossibility results (FLP, CAP, NP-hardness), property-based and chaos testing, and formal tools (TLA+, Coq, Z3) while treating partial failure, race conditions, label leakage, and...Votes: 0GitHub stars: 8
- Computer Security ResearcherExpert-thinking profile for Computer Security Researcher (dry-computational / vulnerability, protocol, and empirical security research): Reasons from explicit threat models and CIA/STRIDE through AFL++/libFuzzer triage, ASan/KASAN oracles, ProVerif/Tamarin proofs, CVE/CWE/CAPEC taxonomies, CyberGym dual-execution benchmarks, Menlo/CVD ethics, and USENIX open-science artifact norms.Votes: 0GitHub stars: 8
- Computer Vision ScientistExpert-thinking profile for Computer Vision Scientist (computational / detection, segmentation, pose & 3D vision): Reasons from calibration, augmentations, and domain shift through COCO/LVIS/KITTI metrics (mAP, IoU, mask AP), convnets vs ViTs, OpenCV/PyTorch/MMDetection stacks, COLMAP/NeRF 3D, and CVPR/ICCV/ECCV eval discipline while treating label noise, train-test leakage, and resolution mismatch as first-class failure modes.Votes: 0GitHub stars: 8
- Conda BiocondaReproducible Conda/Mamba/micromamba environment management for bioinformatics, with correct Bioconda channel setup, environment files, version pinning, and lockfiles. Use when installing bioinformatics tools (samtools, bwa, GATK, STAR, etc.), creating or sharing reproducible environments, resolving "PackagesNotFound"/slow-solver issues, or when a project has an environment.yml. For pure-Python projects without compiled bio tools, prefer uv (see modern-python).Votes: 0GitHub stars: 8
- Condensed Matter PhysicistExpert-thinking profile for Condensed Matter Physicist (experimental / computational / quantum materials): Reasons from Bloch bands, quasiparticles, and symmetry through ARPES/STM/neutron/transport workflows, VASP/QE/Wannier90/DMFT, and Materials Project/ICSD/MPDS while treating matrix-element artifacts, Mott vs. DFT gaps, pseudogap vs. SC gap, and Planckian bad-metal transport as first-class failure modes.Votes: 0GitHub stars: 8
- Configuring Opentelemetry DotnetConfigure OpenTelemetry distributed tracing, metrics, and logging in ASP.NET Core using the .NET OpenTelemetry SDK. Use when adding observability, setting up OTLP exporters, creating custom metrics/spans, or troubleshooting distributed trace correlation.Votes: 0GitHub stars: 8
- Connectomics ScientistExpert-thinking profile for Connectomics Scientist (computational / volume EM connectomics + collaborative proofreading): Reasons from vEM acquisition and petascale alignment through FFN/RoboEM segmentation, FlyWire/neuPrint/MICrONS/H01 graphs, and synapse-level QC while treating split/merge errors, alignment tears, false synapses, and release-version drift as first-class failure modes.Votes: 0GitHub stars: 8
- Conservation BiologistExpert-thinking profile for Conservation Biologist (field / genetics / planning / threat & recovery assessment): Reasons from IUCN Red List A–E and Green Status recovery metrics, PVA/Ne, occupancy and distance sampling (unmarked, msocc, RMark), prioritizr/Marxan SCP, Conservation Evidence and ROSES synthesis, counterfactual impact evaluation, METT/SMART PAME, and eDNA false-positive models while treating pseudoreplication, GBIF...Votes: 0GitHub stars: 8
- Conservation ScientistExpert-thinking profile for Conservation Scientist (field monitoring / conservation genetics / systematic planning / impact evaluation / IUCN assessment (Red List, Green Status)): Reasons from measurable biodiversity change, counterfactual impact, and effective population size through IUCN Red List/Green Status criteria, occupancy and PVA models (unmarked, Vortex), Marxan/prioritizr planning, and BACI/matching designs while treating detection heterogeneity, spatial pseudoreplication, REDD+...Votes: 0GitHub stars: 8
- Constant Time AnalysisDetects timing side-channel vulnerabilities in cryptographic code. Use when implementing or reviewing crypto code, encountering division on secrets, secret-dependent branches, or constant-time programming questions in C, C++, Go, Rust, Swift, Java, Kotlin, C#, PHP, JavaScript, TypeScript, Python, or Ruby.Votes: 0GitHub stars: 8
- Construction EngineerExpert-thinking profile for Construction Engineer (field + office / construction management, means & methods, QA/QC): Reasons from design intent versus means-and- methods through CPM/P6 and Last Planner scheduling, Revit/Navisworks BIM coordination, IBC Chapter 17 special inspections, ASTM C31/C39 cylinder acceptance, and ACI 318 low- break/core protocols while treating formwork collapse, honeycombing, tolerance stack- up, and schedule...Votes: 0GitHub stars: 8
- Control Systems EngineerExpert-thinking profile for Control Systems Engineer (feedback design / state-space & robust control / digital implementation / industrial (PLC/DCS, IEC 61508/61511)): Reasons from plant dynamics, stability margins, and disturbance-rejection specs through Bode/Nyquist and Routh-Hurwitz analysis, LQR/H-infinity and pole placement, Kalman/EKF observers, RGA pairing, and HIL validation while treating integrator windup, actuator saturation and backlash limit cycles, sensor delay masking...Votes: 0GitHub stars: 8
- CoreCore agent-browser usage guide. Read this before running any agent-browser commands. Covers the snapshot-and-ref workflow, navigating pages, interacting with elements (click, fill, type, select), extracting text and data, taking screenshots, managing tabs, handling forms and auth, waiting for content, running multiple browser sessions in parallel, and troubleshooting common failures. Use when the user asks to interact with a website, fill a form, click something, extract data, take a screensh...Votes: 0GitHub stars: 8
- Corrosion EngineerExpert-thinking profile for Corrosion Engineer (field / laboratory / asset integrity & oil & gas infrastructure): Reasons from electrochemical couples, Pourbaix/galvanic selection, and ISO 15156 sour-service limits through AMPP SP0169/SP0502 CP and ECDA, CO₂ models (NORSOK M-506, OLI), coupon/ER/LPR monitoring, and ASTM G5/G48/G61 qualification while treating IR-masked CIPS, salt-spray overclaim, MIC vs. biocide residual, and...Votes: 0GitHub stars: 8
- CosmochemistExpert-thinking profile for Cosmochemist (meteorite petrology / isotope geochemistry / presolar grains): Reasons from oxygen three-isotope taxonomy (Δ17O), chondrite–achondrite classification, and presolar grain NanoSIMS through Meteoritical Bulletin curation, Al–Mg and Pb–Pb isochrons, CRE vs formation-age separation, and clean-lab sample prep while treating terrestrial weathering, mount contamination, and breccia...Votes: 0GitHub stars: 8
- CosmologistExpert-thinking profile for Cosmologist (theoretical / observational / computational cosmology): Reasons from Friedmann/ΛCDM, r_s and transfer functions, and multi-probe inference (Planck CMB, DESI BAO, lensing, Pantheon+ SNe) through CAMB/CLASS, Cobaya, and GetDist while treating photo-z–IA coupling, CMB foreground pipelines, H0/S8 tensions, and emulator extrapolation as first-class failure modes.Votes: 0GitHub stars: 8
- Cost ManagementCut your Grafana Cloud bill by attributing spend to teams and reducing telemetry volume. Covers FOCUS-compliant billing dashboards, cost-attribution labels in Alloy, Adaptive Metrics (cardinality reduction), Adaptive Logs (drop/sample), Adaptive Traces (tail sampling), usage alerts, and an optimization checklist. Use when investigating a high Grafana Cloud bill, attributing observability cost to a team or service, reducing active series / log bytes / trace spans, or setting up usage / quota a...Votes: 0GitHub stars: 8
- Creating Mermaid Dbt DagGenerates a Mermaid flowchart diagram of dbt model lineage using MCP tools, manifest.json, or direct code parsing as fallbacks. Use when visualizing dbt model lineage and dependencies as a Mermaid diagram in markdown format.Votes: 0GitHub stars: 8
- CrewaiRole-based multi-agent orchestration framework for building "Crews" of collaborating LLM agents (each with a role, goal, backstory, and optional tools) that execute sequential or hierarchical task pipelines, plus event-driven "Flows" for precise, single-LLM-call orchestration. Use when composing specialized agents (e.g. a research agent + an analysis agent + a writer agent) into a declarative pipeline for complex multi-step tasks like automated literature review or multi-agent research workfl...Votes: 0GitHub stars: 8
- Crispr Screen TriageDeterministic CRISPR screen hit ranking from local guide-level count tablesVotes: 0GitHub stars: 8
- Critical Care ResearcherExpert-thinking profile for Critical Care Researcher (clinical / research): Reasons from acute physiology trajectories, modular organ dysfunction, and cluster-aware trial design through APACHE/SAPS/SOFA scoring, Berlin/Sepsis-3/KDIGO definitions, MIMIC-IV phenotyping, and target-trial emulation with clone-censor-weighting while treating immortal-time bias, cluster contamination, competing...Votes: 0GitHub stars: 8
- Crop Protection ScientistExpert-thinking profile for Crop Protection Scientist (field / regulatory / IPM & pesticide stewardship): Reasons from IPM, EIL/ET, and FRAC/HRAC/IRAC MoA rotation through GEP/EPPO efficacy trials, CDMS label law, BBCH timing, DRT application, PPDB/fate modeling, and MRL/GAP alignment while treating resistance, drift, herbicide carryover, and abiotic mimicry as first-class failure modes.Votes: 0GitHub stars: 8
- Crop ScientistExpert-thinking profile for Crop Scientist (field trials / agronomy / crop physiology / G×E×M / MET stability analysis): Reasons from genotype-by-environment-by-management interaction, yield-component partitioning, and phenology-gated critical periods through MET stability analysis (AMMI, Finlay-Wilkinson, GGE biplots), mixed models (ASReml-R, lme4), N-response curves (quadratic-plateau, MRTN), and crop models (APSIM, DSSAT) while...Votes: 0GitHub stars: 8
- Cryo Em Structural BiologistExpert-thinking profile for Cryo-EM Structural Biologist (wet-lab / structural biology / single-particle cryo-EM): Reasons from vitrified specimens, CTF-modulated projections, particle heterogeneity, FSC validation, local resolution, preferred orientation, and map-model fit before making structural claims.Votes: 0GitHub stars: 8
- CryptographerExpert-thinking profile for Cryptographer (theoretical / applied / implementation & standards cryptography): Reasons from IND-CCA/EUF-CMA games and tight reductions through AES-GCM/RSA-OAEP/ECDSA, ML-KEM/ML-DSA (FIPS 203/204), ProVerif/Tamarin/EasyCrypt, dudect constant-time, CAVP/ACVP and FIPS 140-3 CMVP—not pure number theory or vuln fuzzing.Votes: 0GitHub stars: 8
- Cryptography EngineerExpert-thinking profile for Cryptography Engineer (applied crypto / protocol design & review / key management (HSM/KMS) / standards (NIST, IETF, FIPS 140-3) / PQC migration): Reasons from explicit threat models, vetted primitives, key hierarchy, and constant-time secret handling through STRIDE threat modeling, standards (RFC 8446 TLS 1.3, FIPS 203/204, Ed25519), test vectors (Wycheproof, NIST CAVP), and protocol verifiers (Tamarin, ProVerif) while treating nonce reuse in AEAD...Votes: 0GitHub stars: 8
- Crystal Growth SpecialistExpert-thinking profile for Crystal Growth Specialist (melt/solution/vapor growth / Cz-Bridgman-FZ-LEC-PVT / defect characterization / SEMI specs): Reasons from thermodynamic driving force, interface stability, constitutional supercooling, and dopant segregation (keff vs. k0, G/R) through Cz/Bridgman/FZ/LEC/PVT growth, CGSim and phase-field simulation, XRT topography, etch-pit counting, and FTIR/SIMS mapping while treating striations, inclusions...Votes: 0GitHub stars: 8
- CrystallographerExpert-thinking profile for Crystallographer (crystal growth / X-ray & neutron diffraction / phasing & refinement / structure validation / deposition (PDB, CSD/CCDC)): Reasons from reciprocal-space diffraction data, Bragg's law, and space- group symmetry through XDS/DIALS scaling, Phaser/SHELX phasing, Coot/Olex2 building, and MolProbity/checkCIF validation while treating merohedral twinning, wrong space groups, model-bias density unsupported by omit/polder maps, and R_free...Votes: 0GitHub stars: 8
- Cue Kind DefinitionAuthor CUE kind definitions for grafana-app-sdk apps - schemas, versioning, field constraints, named type definitions, custom routes, and codegen configuration. Scaffolds kinds via `grafana-app-sdk project kind add`, writes spec/status schemas with type constraints (regex, enum, range), defines `#`-prefixed named types for reusable structs, registers versions in the app manifest, and runs `grafana-app-sdk generate` with explicit error recovery. Use when working with CUE kinds, adding a new re...Votes: 0GitHub stars: 8
- CuequivarianceDefine custom groups (Irrep subclasses), build segmented tensor products with CG coefficients, create equivariant polynomials and IrDictPolynomials, and use built-in descriptors (linear, tensor products, spherical harmonics). Use when working with cuequivariance group theory, irreps, or segmented polynomials.Votes: 0GitHub stars: 8
- Cuopt User RulesBase rules for end users calling NVIDIA cuOpt (routing/LP/MILP/QP/install/server). Not for cuOpt internals — use cuopt-developer for those.Votes: 0GitHub stars: 8
- CutadaptAdapter, primer, and poly-A/T trimming for high-throughput sequencing reads (FASTQ/FASTA). Use for ATAC-seq (Nextera adapter removal), ChIP-seq/CUT&RUN, small RNA-seq (preserving reads as short as ~18 nt), and amplicon/primer trimming where exact or linked adapter sequences matter more than fastp's heuristic auto-detection. Covers 3'/5'/linked adapters, IUPAC wildcards, paired-end synchronization, quality/length filtering, and demultiplexing by barcode.Votes: 0GitHub stars: 8
- CytogeneticistExpert-thinking profile for Cytogeneticist (clinical / research): Reasons from chromosome architecture, copy-number state, banding resolution, and cell-line/clonal context through karyotype, FISH, chromosomal microarray, optical genome mapping, ISCN, and ACMG/ClinGen dosage standards while treating confined placental mosaicism, maternal cell contamination, pseudomosaicism, and...Votes: 0GitHub stars: 8
- D3 Data VisualizationBuild custom data visualizations with D3. Use when the user needs SVG or DOM-based charts, rich annotation, domain-native contextual backgrounds, data joins, custom scales or interactions, scroll-driven SVG scene states, or precise control over browser visualization behavior.Votes: 0GitHub stars: 8
- Dagster ExpertExpert guidance for working with Dagster and the dg CLI. Use before doing any task that requiresVotes: 0GitHub stars: 8