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Claude Skills by stanfish06

github.com/stanfish06

1,787 skillsA× 1,698B× 53C× 13D× 19F× 413 installs1,944 views

Bio Databases PlatformsA> [!info] What it does > Submit compact QuickGO requests for GO terms, annotations, and ontology traversal. Use when a user wants concise QuickGO summaries **Source:** [skills/quickgo-skill/SKILL.md](../../../skills/quickgo-skill/SKILL.md) · **Domain:** [Bio Databases, Lab & Cloud Platforms](../../maps/bio-databases-platforms.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)databasesgodatabaseVotes: 0GitHub stars: 8
Bio Databases PlatformsA> [!info] What it does > Submit compact Reactome ContentService requests for pathway, event, participant, search, and diagram-related data. Use when a user wants concise Reactome summaries **Source:** [skills/reactome-skill/SKILL.md](../../../skills/reactome-skill/SKILL.md) · **Domain:** [Bio Databases, Lab & Cloud Platforms](../../maps/bio-databases-platforms.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)databasesreactdatabaseVotes: 0GitHub stars: 8
Bio Databases PlatformsA> [!info] What it does > Route broad or ambiguous life-sciences research requests to the right skills, normalize core entities, optionally parallelize independent evidence gathering with subagents when available, and synthesize a concise evidence-backed answer. Use when a user asks a general life-sciences question that could span multiple sources or analysis types. **Source:** [skills/research-router-skill/SKILL.md](../../../skills/research-router-skill/SKILL.md) · **Domain:** [Bio Database...researchrustdatabaseVotes: 0GitHub stars: 8
Bio Databases PlatformsA> [!info] What it does > Submit compact STRING API requests for network, interaction partner, and enrichment endpoints. Use when a user wants concise STRING summaries **Source:** [skills/string-skill/SKILL.md](../../../skills/string-skill/SKILL.md) · **Domain:** [Bio Databases, Lab & Cloud Platforms](../../maps/bio-databases-platforms.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)databasesapidatabaseVotes: 0GitHub stars: 8
Bio Databases PlatformsA> [!info] What it does > Submit compact UniProt REST API requests for UniProtKB, UniRef, UniParc, and FASTA stream endpoints. Use when a user wants concise UniProt summaries; save raw JSON or FASTA only on request. **Source:** [skills/uniprot-skill/SKILL.md](../../../skills/uniprot-skill/SKILL.md) · **Domain:** [Bio Databases, Lab & Cloud Platforms](../../maps/bio-databases-platforms.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)databasesapidatabaseVotes: 0GitHub stars: 8
Drug Discovery ChemA> [!info] What it does > Submit compact AlphaFold Protein Structure Database API requests for prediction, UniProt summary, sequence summary, and annotation lookups. Use when a user wants AlphaFold metadata or concise structure summaries **Source:** [skills/alphafold-skill/SKILL.md](../../../skills/alphafold-skill/SKILL.md) · **Domain:** [Drug Discovery, Cheminformatics & Structural Biology](../../maps/drug-discovery-chem.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Sk...databasesapidatabaseVotes: 0GitHub stars: 8
Drug Discovery ChemA> [!info] What it does > Submit compact BindingDB REST API requests for ligand-target binding lookups by PDB, UniProt, or similarity search. Use when a user wants concise BindingDB summaries; save raw payloads only on request. **Source:** [skills/bindingdb-skill/SKILL.md](../../../skills/bindingdb-skill/SKILL.md) · **Domain:** [Drug Discovery, Cheminformatics & Structural Biology](../../maps/drug-discovery-chem.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index...researchapiVotes: 0GitHub stars: 8
Drug Discovery ChemA> [!info] What it does > Submit compact ChEBI 2.0 API requests for chemical search, compound lookup, ontology traversal, and structure metadata. Use when a user wants concise ChEBI summaries **Source:** [skills/chebi-skill/SKILL.md](../../../skills/chebi-skill/SKILL.md) · **Domain:** [Drug Discovery, Cheminformatics & Structural Biology](../../maps/drug-discovery-chem.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)researchapiVotes: 0GitHub stars: 8
Drug Discovery ChemA> [!info] What it does > Submit compact ChEMBL API requests for activity, molecule, target, mechanism, and text-search endpoints. Use when a user wants concise ChEMBL summaries **Source:** [skills/chembl-skill/SKILL.md](../../../skills/chembl-skill/SKILL.md) · **Domain:** [Drug Discovery, Cheminformatics & Structural Biology](../../maps/drug-discovery-chem.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)researchapiVotes: 0GitHub stars: 8
Drug Discovery ChemA> [!info] What it does > Submit compact HMDB search requests for metabolites, proteins, diseases, and pathways. Use when a user wants concise HMDB summaries **Source:** [skills/hmdb-skill/SKILL.md](../../../skills/hmdb-skill/SKILL.md) · **Domain:** [Drug Discovery, Cheminformatics & Structural Biology](../../maps/drug-discovery-chem.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)researchVotes: 0GitHub stars: 8
Drug Discovery ChemA> [!info] What it does > Submit compact PharmGKB API requests for genes, variants, clinical annotations, dosing guidelines, and search. Use when a user wants concise PharmGKB summaries **Source:** [skills/pharmgkb-skill/SKILL.md](../../../skills/pharmgkb-skill/SKILL.md) · **Domain:** [Drug Discovery, Cheminformatics & Structural Biology](../../maps/drug-discovery-chem.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)researchapiVotes: 0GitHub stars: 8
Drug Discovery ChemA> [!info] What it does > Submit compact PubChem PUG REST requests for compound properties, descriptions, assay summaries, and substance metadata. Use when a user wants concise PubChem summaries **Source:** [skills/pubchem-pug-skill/SKILL.md](../../../skills/pubchem-pug-skill/SKILL.md) · **Domain:** [Drug Discovery, Cheminformatics & Structural Biology](../../maps/drug-discovery-chem.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)researchVotes: 0GitHub stars: 8
Drug Discovery ChemA> [!info] What it does > Submit compact RCSB PDB requests for core metadata, Search API queries, and FASTA downloads. Use when a user wants concise RCSB summaries; save raw JSON or FASTA only on request. **Source:** [skills/rcsb-pdb-skill/SKILL.md](../../../skills/rcsb-pdb-skill/SKILL.md) · **Domain:** [Drug Discovery, Cheminformatics & Structural Biology](../../maps/drug-discovery-chem.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)researchapiVotes: 0GitHub stars: 8
Drug Discovery ChemA> [!info] What it does > Submit compact Rhea reaction search requests for biochemical reactions and reaction IDs. Use when a user wants concise Rhea summaries **Source:** [skills/rhea-skill/SKILL.md](../../../skills/rhea-skill/SKILL.md) · **Domain:** [Drug Discovery, Cheminformatics & Structural Biology](../../maps/drug-discovery-chem.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)researchreactVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Fetch compact BioBank Japan PheWAS summaries for single variants by accepting rsID, GRCh38, or GRCh37 input and resolving to the required GRCh37 query. Use when a user wants concise BBJ association results for one variant **Source:** [skills/biobankjapan-phewas-skill/SKILL.md](../../../skills/biobankjapan-phewas-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) ·...databasesVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Submit compact CIViC GraphQL requests for cancer variant interpretation schema inspection and targeted evidence retrieval. Use when a user wants concise CIViC summaries **Source:** [skills/civic-skill/SKILL.md](../../../skills/civic-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)ai-agentsVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Submit compact ClinVar Clinical Tables and NCBI Variation requests for search, VCV, RCV, SCV, and RefSNP lookups. Use when a user wants variant-level summaries or identifier mapping **Source:** [skills/clinvar-variation-skill/SKILL.md](../../../skills/clinvar-variation-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)toolsVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Submit compact eQTL Catalogue API requests for association retrieval and documented metadata endpoints. Use when a user wants concise public eQTL Catalogue summaries **Source:** [skills/eqtl-catalogue-skill/SKILL.md](../../../skills/eqtl-catalogue-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)ai-agentsapiVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise FinnGen association results for one variant **Source:** [skills/finngen-phewas-skill/SKILL.md](../../../skills/finngen-phewas-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) · **Index:**...databasesVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Submit compact Genebass gene burden requests for one Ensembl gene ID and one burden set. Use when a user wants concise Genebass PheWAS summaries **Source:** [skills/genebass-gene-burden-skill/SKILL.md](../../../skills/genebass-gene-burden-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)toolsVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Submit compact gnomAD GraphQL requests for frequency, gene constraint, and variant context queries. Use when a user wants concise gnomAD summaries **Source:** [skills/gnomad-graphql-skill/SKILL.md](../../../skills/gnomad-graphql-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)toolsVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Fetch GTEx single-tissue eQTL associations from one variant input by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query for the GTEx v2 API. Use when a user wants eQTL associations returned as JSON. **Source:** [skills/gtex-eqtl-skill/SKILL.md](../../../skills/gtex-eqtl-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) · **Index:*...databasesapiVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Submit compact GWAS Catalog REST API v2 requests for studies, associations, SNPs, EFO traits, genes, publications, loci, and metadata. Use when a user wants concise GWAS Catalog summaries **Source:** [skills/gwas-catalog-skill/SKILL.md](../../../skills/gwas-catalog-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)developmentapiVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Map GWAS loci to ranked candidate genes using a deterministic multi-skill chain (EFO -> GWAS -> coordinates -> Open Targets L2G/coloc -> eQTL -> burden/coding context), with reproducible tables and optional figures. Use when a user provides a trait/EFO term and/or lead variants and needs locus-to-gene prioritization for downstream biology decisions. **Source:** [skills/locus-to-gene-mapper-skill/SKILL.md](../../../skills/locus-to-gene-mapper-skill/SKILL.md) · **Doma...toolsVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Submit compact NCBI Datasets v2 requests for assembly, genome, taxonomy, and related metadata endpoints. Use when a user wants concise NCBI Datasets summaries; save raw JSON or text only on request. **Source:** [skills/ncbi-datasets-skill/SKILL.md](../../../skills/ncbi-datasets-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../i...dataVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Fetch compact TPMI PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise TPMI association results for one variant **Source:** [skills/tpmi-phewas-skill/SKILL.md](../../../skills/tpmi-phewas-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Ind...databasesVotes: 0GitHub stars: 8
Genomics VariantsA> [!info] What it does > Fetch compact UKB-TOPMed PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise UKB-TOPMed association results for one variant **Source:** [skills/ukb-topmed-phewas-skill/SKILL.md](../../../skills/ukb-topmed-phewas-skill/SKILL.md) · **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md) · **Table:** [skills.base](../../skills.base) ·...databasesVotes: 0GitHub stars: 8
Literature DiscoveryA> [!info] What it does > Submit compact bioRxiv and medRxiv API requests for details, publication-linkage, and DOI lookups. Use when a user wants concise preprint metadata summaries **Source:** [skills/biorxiv-skill/SKILL.md](../../../skills/biorxiv-skill/SKILL.md) · **Domain:** [Literature Search & Knowledge Discovery](../../maps/literature-discovery.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)researchapiVotes: 0GitHub stars: 8
Literature DiscoveryA> [!info] What it does > Submit compact NCBI PMC Open Access requests for article/file availability metadata. Use when a user wants concise PMC Open Access summaries; save raw XML only on request. **Source:** [skills/ncbi-pmc-skill/SKILL.md](../../../skills/ncbi-pmc-skill/SKILL.md) · **Domain:** [Literature Search & Knowledge Discovery](../../maps/literature-discovery.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)researchVotes: 0GitHub stars: 8
Sequence PhylogeneticsA> [!info] What it does > Submit, poll, and summarize NCBI BLAST Common URL API jobs (Blast.cgi) for nucleotide or protein sequences. Use when a user wants RID status, BLAST results, or compact top-hit summaries; fetch raw Text/JSON2 only on request. **Source:** [skills/ncbi-blast-skill/SKILL.md](../../../skills/ncbi-blast-skill/SKILL.md) · **Domain:** [Sequence Analysis, NGS & Phylogenetics](../../maps/sequence-phylogenetics.md) · **Table:** [skills.base](../../skills.base) · **Index:**...dataapiVotes: 0GitHub stars: 8
Sequence PhylogeneticsA> [!info] What it does > Submit compact RNAcentral API requests for RNA entry browsing, single-entry lookup, and cross-reference retrieval. Use when a user wants concise RNAcentral summaries **Source:** [skills/rnacentral-skill/SKILL.md](../../../skills/rnacentral-skill/SKILL.md) · **Domain:** [Sequence Analysis, NGS & Phylogenetics](../../maps/sequence-phylogenetics.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)ai-agentsapiVotes: 0GitHub stars: 8
Single Cell RnaseqA> [!info] What it does > Submit compact Bgee SPARQL requests for healthy wild-type expression metadata and ontology-aware lookup patterns. Use when a user wants concise Bgee summaries; save raw results only on request. **Source:** [skills/bgee-skill/SKILL.md](../../../skills/bgee-skill/SKILL.md) · **Domain:** [Single-Cell, RNA-seq & Functional Genomics](../../maps/single-cell-rnaseq.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)educationexpressVotes: 0GitHub stars: 8
Single Cell RnaseqA> [!info] What it does > Submit compact ENCODE REST API requests for object lookups, portal-style search, and metadata retrieval. Use when a user wants concise ENCODE summaries **Source:** [skills/encode-skill/SKILL.md](../../../skills/encode-skill/SKILL.md) · **Domain:** [Single-Cell, RNA-seq & Functional Genomics](../../maps/single-cell-rnaseq.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)ai-agentsapiVotes: 0GitHub stars: 8
Vault MetaA> [!info] What it does > Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use when the user asks to analyze their recent work and propose skills based on what they actually do. Requires the screenpipe daemon (https://github.com/screenpipe/screenpipe) running locally on port 3030 — the skill has no other data ...researchrustgitVotes: 0GitHub stars: 8
Vault MetaA> [!info] What it does > Evaluate a local Codex skill in engineer-friendly terms. Use when the user says "evaluate this skill", "give me an analysis of the game dev skill", "audit this skill", "why did this score that way", "what should I fix first", or asks for a skill-specific report before benchmarking it. **Source:** [skills/evaluate-skill/SKILL.md](../../../skills/evaluate-skill/SKILL.md) · **Domain:** [Vault, Skills & Workflow Meta](../../maps/vault-meta.md) · **Table:** [skills.bas...businessVotes: 0GitHub stars: 8
Vault MetaA> [!info] What it does > Turn plugin-eval findings into a concrete rewrite brief for a Codex skill. Use when the user already evaluated a skill and now wants Codex to improve it, especially after asking what to fix first. **Source:** [skills/improve-skill/SKILL.md](../../../skills/improve-skill/SKILL.md) · **Domain:** [Vault, Skills & Workflow Meta](../../maps/vault-meta.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)researchVotes: 0GitHub stars: 8
Vault MetaA> [!info] What it does > Minimal example skill for plugin-eval tests. Use when the user wants a compact demonstration of a well-structured skill. **Source:** [skills/minimal-skill/SKILL.md](../../../skills/minimal-skill/SKILL.md) · **Domain:** [Vault, Skills & Workflow Meta](../../maps/vault-meta.md) · **Table:** [skills.base](../../skills.base) · **Index:** [Skills Index](../../index.md)toolsVotes: 0GitHub stars: 8