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Claude Skills by stanfish06
github.com/stanfish061,785 skills13 installs1,943 views
- NeuroengineerExpert-thinking profile for Neuroengineer (wet-lab / neural interfaces / chronic electrophysiology / translational regulatory): Reasons from electrode–electrolyte charge-density limits and foreign-body gliosis through Utah/Neuropixels chronic recording, EIS impedance spectroscopy, Kilosort3/MountainSort validation, FDA IDE pathways, and explant histology (GFAP/Iba1) while treating impedance drift, unvalidated auto-sort inflation, and...Votes: 0GitHub stars: 8
- Neuroimaging ScientistExpert-thinking profile for Neuroimaging Scientist (clinical / research): Reasons from k-space acquisition physics, BOLD hemodynamics, and per-voxel statistical models through fMRIPrep/QSIPrep BIDS pipelines, FSL/SPM/nilearn analysis, neuroCombat harmonization, and TFCE/permutation inference while treating head motion, partial- volume and reference-region errors in PET, global-signal...Votes: 0GitHub stars: 8
- NeuroinformaticianExpert-thinking profile for Neuroinformatician (data standards / BIDS-NWB / reproducible pipelines / archive federation (DANDI, OpenNeuro) / atlas registration): Reasons from FAIR schema, provenance, and pinned software environments through BIDS, NWB, ontologies, versioned Snakemake/Nextflow pipelines, and bids- validator/nwbinspector checks while treating silent metadata failures like wrong NWB units, colliding multi-site subject IDs, unsynced event onsets, and atlas-version...Votes: 0GitHub stars: 8
- NeurologistExpert-thinking profile for Neurologist (clinical / research): Reasons from anatomic localization, time course, and phenomenology through NIHSS/ASPECTS stroke triage, ILAE 2025 seizure classification, McDonald 2017 and AQP4/MOG cell-based assays, EEG and EMG/NCS, and SNOOP4 red flags, while treating CT-negative early ischemia, ~50%-sensitive routine EEG, MS-versus-NMOSD/MOGAD...Votes: 0GitHub stars: 8
- NeuropharmacologistExpert-thinking profile for Neuropharmacologist (wet-lab / in vitro pharmacology + in vivo behavioral PK/PD + translational imaging): Reasons from Kp,uu,brain and receptor occupancy, radioligand binding with depletion-aware Ki, biased GPCR/allosteric signaling, PDSP/GtoPdb panels, microdialysis and PET RO, and operant self- administration while treating Cheng-Prusoff error, P-gp efflux, FST validity limits, and patch-clamp Rs artifacts as first-class...Votes: 0GitHub stars: 8
- NeurophysiologistExpert-thinking profile for Neurophysiologist (wet-lab / intracellular & extracellular electrophysiology + spike sorting): Reasons from membrane biophysics, patch clamp Rs/seal quality, Neuropixels AP/LF streams, LFP referencing and spike contamination, Kilosort4/Phy curation, and stimulation-artifact suppression.Votes: 0GitHub stars: 8
- NeuroscientistExpert-thinking profile for Neuroscientist (integrative / multiscale circuits / in vivo electrophysiology + optogenetics / translational (ARRIVE, BIDS/NWB)): Expert profile for neuroscientist — see AGENTS.md for field-specific methods and failure modes.Votes: 0GitHub stars: 8
- NextflowBuild, run, and debug Nextflow data pipelines and nf-core workflows end to end. Use whenever the user mentions Nextflow, nf-core, .nf files, nextflow.config, DSL2, processes/channels/operators, samplesheets, or wants to run a community pipeline (e.g. nf-core/rnaseq, nf-core/sarek), write or test a module/subworkflow with nf-test, configure executors/containers (Docker, Singularity/Apptainer, Conda, Wave), scale a workflow to HPC/SLURM or cloud (AWS Batch, Google Batch, Azure, Kubernetes), or ...Votes: 0GitHub stars: 8
- NextjsNext.js App Router expert guidance. Use when building, debugging, or architecting Next.js applications — routing, Server Components, Server Actions, Cache Components, layouts, middleware/proxy, data fetching, rendering strategies, and deployment on Vercel.Votes: 0GitHub stars: 8
- Ngs Amplicon MicrobiomeKick off public 16S, 18S, ITS, COI, or other marker-gene amplicon microbiome workflows using nf-core/ampliseq, QIIME2, DADA2, and Cutadapt.Votes: 0GitHub stars: 8
- Ngs Analysis RouterRoute BCL, FASTQ, BAM/CRAM, count-matrix, or VCF sequencing requests to the right public NGS analysis skill and ask only the missing assay-specific setup questions.Votes: 0GitHub stars: 8
- Ngs Atacseq Peaks QcRun or plan ATAC-seq QC, alignment, TSS enrichment, fragment-size, blacklist, peak-calling, consensus peak, and differential accessibility workflows.Votes: 0GitHub stars: 8
- Ngs Bcl To FastqValidate Illumina BCL run folders and sample sheets, plan demultiplexing, review index/UMI/lane choices, run BCL-to-FASTQ conversion, and interpret demux metrics while surfacing license/download boundaries.Votes: 0GitHub stars: 8
- Ngs Bulk Rnaseq Counts QcRun or plan bulk RNA-seq FASTQ-to-count processing with sample-sheet, strandedness, genome annotation, alignment or pseudoalignment, MultiQC, and count-matrix QC checks.Votes: 0GitHub stars: 8
- Ngs Bulk Rnaseq Differential ExpressionRun or plan bulk RNA-seq differential-expression analysis from count matrices with replicate, design formula, contrast, batch, normalization, QC plot, and result-table checks.Votes: 0GitHub stars: 8
- Ngs Bulk RnaseqDispatch bulk RNA-seq requests to FASTQ-to-count QC or count-matrix differential-expression skills using nf-core/rnaseq, STAR, Salmon, featureCounts, MultiQC, and R/Bioconductor workflows.Votes: 0GitHub stars: 8
- Ngs Chip Cutrun Peaks QcRun or plan ChIP-seq, CUT&RUN, or CUT&Tag QC, control handling, spike-in, peak calling, broad-vs-narrow target selection, replicate, bigWig, and differential binding workflows.Votes: 0GitHub stars: 8
- Ngs Cli ToolkitThe core command-line NGS workhorses for going from raw reads to variants — bwa-mem2/minimap2/bowtie2 (alignment), samtools (BAM sort/index/stats/view), bcftools (VCF call/filter/normalize/query), GATK4 (BQSR, HaplotypeCaller, best practices), and plink2 (genotype QC, PCA, GWAS). Use for read alignment, BAM/CRAM manipulation, variant calling and VCF wrangling on the command line. For Python-native BAM/VCF access use pysam; for full managed pipelines use the nf-core wrappers.Votes: 0GitHub stars: 8
- Ngs Dna Germline VariantsRun or plan deep germline WGS, WES, targeted-panel, cohort, or trio variant-calling workflows with reference-build, known-sites, QC, joint-calling, and annotation checks.Votes: 0GitHub stars: 8
- Ngs Dna Somatic VariantsRun or plan tumor-normal, tumor-only, WGS, WES, or cancer-panel somatic variant workflows with pairing, contamination, panel-of-normals, purity, QC, and annotation checks.Votes: 0GitHub stars: 8
- Ngs Dna Umi Panel VariantsRun or plan targeted DNA panel variant workflows that use UMIs, duplex consensus reads, molecular barcodes, low-frequency calling, target coverage, and panel-specific QC.Votes: 0GitHub stars: 8
- Ngs Dna Variant CallingDispatch WGS, WES, or targeted DNA variant requests to germline, somatic, or UMI-panel skills, then plan public nf-core/sarek, GATK4, DeepVariant, samtools, or bcftools workflows.Votes: 0GitHub stars: 8
- Ngs Epigenomics PeaksDispatch ATAC-seq, ChIP-seq, CUT&RUN, or CUT&Tag requests to assay-specific QC, alignment, signal-track, peak-calling, consensus, and differential peak workflows.Votes: 0GitHub stars: 8
- Ngs Fastq QcValidate FASTQ inputs, run local FastQC/MultiQC QC, interpret QC signals, and optionally execute fastp or Cutadapt trimming branches without overwriting raw reads.Votes: 0GitHub stars: 8
- Ngs Runtime EnvCheck whether public NGS tools and packages already exist before downloading, installing, or running a sequencing pipeline.Votes: 0GitHub stars: 8
- Ngs Scrna SeqRoute single-cell or single-nucleus RNA-seq FASTQs to public count-generation workflows and defer post-count matrix QC, annotation, clustering, and UMAP analysis to the embedded scrna-seq-qc skill.Votes: 0GitHub stars: 8
- Ngs Shotgun MetagenomicsKick off public shotgun metagenomics QC, host-depletion, taxonomic profiling, and functional profiling workflows using nf-core/taxprofiler, Kraken2, Bracken, MetaPhlAn, and HUMAnN.Votes: 0GitHub stars: 8
- Node Link And Diagram LayoutChoose and apply automatic layout strategies for node-link diagrams and connected-node visuals. Use when the user asks how to auto-arrange nodes, reduce line crossings, route edges, avoid overlaps, stabilize layout, or choose graph-layout algorithms for network diagrams, dependency graphs, database schema diagrams, ERDs, state machines, decision trees, flow diagrams, box-and-line editors, or other line-connected nodes.Votes: 0GitHub stars: 8
- Nonlinear Dynamics Chaos ScientistExpert-thinking profile for Nonlinear Dynamics & Chaos Scientist (theoretical / computational / experimental dynamical systems): Reasons from flows, maps, bifurcations, and invariant sets; continues with MatCont/AUTO/COCO, validates chaos with IAAFT surrogates and embedding convergence, and treats spurious Lyapunov exponents, stiff integrator artifacts, and colored-noise confounds as first-class failure modes.Votes: 0GitHub stars: 8
- Notion Knowledge CaptureCapture conversations and decisions into structured Notion pages; use when turning chats/notes into wiki entries, how-tos, decisions, or FAQs with proper linking.Votes: 0GitHub stars: 8
- Notion Meeting IntelligencePrepare meeting materials with Notion context and Codex research; use when gathering context, drafting agendas/pre-reads, and tailoring materials to attendees.Votes: 0GitHub stars: 8
- Notion Research DocumentationResearch across Notion and synthesize into structured documentation; use when gathering info from multiple Notion sources to produce briefs, comparisons, or reports with citations.Votes: 0GitHub stars: 8
- Notion Spec To ImplementationTurn Notion specs into implementation plans, tasks, and progress tracking; use when implementing PRDs/feature specs and creating Notion plans + tasks from them.Votes: 0GitHub stars: 8
- Nuclear ChemistExpert-thinking profile for Nuclear Chemist (clinical / research): Reasons from decay- corrected activity ledgers, decay modes and cross sections, and ALARA dose control through Bateman/ORIGEN modeling, extraction-chromatography separations (TRU/Sr/TEVA resins), and HPGe/alpha/LSC spectroscopy while treating daughter ingrowth, generator breakthrough, spectral pile-up and sum peaks...Votes: 0GitHub stars: 8
- Nuclear EngineerExpert-thinking profile for Nuclear Engineer (reactor physics / thermal hydraulics / safety & licensing): Reasons from k_eff, DNBR/CHF margins, xenon transients, and defense-in-depth; couples SCALE/MCNP, PARCS, TRACE/RELAP, and MELCOR to 10 CFR and PRA; treats nodalization, nuclear-data, and CHF-correlation uncertainties as first- class failure modes.Votes: 0GitHub stars: 8
- Nuclear Medicine ScientistExpert-thinking profile for Nuclear Medicine Scientist (clinical / research): Reasons from radioactive decay, biodistribution kinetics, and detector physics through HPLC/TLC radiochemical-purity QC, dose-calibrator cross-calibration, OSEM/PSF reconstruction, and MIRD/OLINDA dosimetry while treating partial-volume effects, attenuation mismatch, 68Ge breakthrough and other radionuclidic impurity...Votes: 0GitHub stars: 8
- Nuclear PhysicistExpert-thinking profile for Nuclear Physicist (experimental / theoretical / nuclear data & applications): Reasons from shell and collective structure, reaction mechanisms, and ENDF/EXFOR data; matches FRIB–CEBAF–RHIC science to R-matrix, Hauser- Feshbach, chiral ab initio, and GEANT4 tools; treats dead time, normalization, and evaluation covariances as first-class failure modes.Votes: 0GitHub stars: 8
- NumbaA Just-In-Time (JIT) compiler for Python that translates a subset of Python and NumPy code into fast machine code. Developed by Anaconda, Inc. Highly effective for accelerating loops, custom mathematical functions, and complex numerical algorithms. Use for @njit, @vectorize, prange, cuda.jit, numba.typed, JIT compilation, parallel loops, GPU acceleration with CUDA, Monte Carlo simulations, numerical algorithms, and high-performance Python computing.Votes: 0GitHub stars: 8
- Number TheoristExpert-thinking profile for Number Theorist (theoretical / computational pure and arithmetic number theory): Reasons from primes, congruences, L-functions, and the Langlands web; chooses algebraic, analytic, and sieve methods; validates with SageMath/PARI/LMFDB while treating PARI stack overflows, conditional-proof leaks, and CRT moduli errors as first-class failure modes.Votes: 0GitHub stars: 8
- Numerical AnalystExpert-thinking profile for Numerical Analyst (theoretical / computational scientific computing): Reasons from well-posedness, discretization, conditioning, and stability; verifies codes with MMS and convergence studies; treats cancellation, stiffness, and solver tolerance floors as first-class failure modes.Votes: 0GitHub stars: 8
- Nutrigx AdvisorPersonalised nutrition report from consumer genetic data (23andMe, AncestryDNA, VCF) — interrogates nutritionally-relevantVotes: 0GitHub stars: 8
- Nutrition ScientistExpert-thinking profile for Nutrition Scientist (nutritional epidemiology / controlled feeding trials / dietary assessment & biomarker validation / survey analysis (NHANES, DLW)): Reasons from intake measurement error, energy balance, and causal triangulation through doubly-labeled-water validation, NCI usual-intake models, DRI (EAR/RDA/UL) frameworks, crossover feeding trials, and Mendelian randomization while treating dietary underreporting, reverse causation (sick-quitter), unadjusted...Votes: 0GitHub stars: 8
- Nvmolkit UsageWrite code that calls the installed nvMolKit Python API for GPU-accelerated, batched RDKit-style operations - Morgan fingerprints, Tanimoto/cosine similarity, ETKDG conformer embedding, MMFF/UFF optimization, TFD, conformer RMSD, Butina clustering, and substructure search. Use when the user is importing `nvmolkit.*`, debugging an `nvmolkit` call, choosing between nvMolKit and RDKit for a batched cheminformatics workflow, or wiring nvMolKit results into a torch/numpy pipeline. Out of scope: bu...Votes: 0GitHub stars: 8
- Observability And InstrumentationInstruments code so production behavior is visible and diagnosable. Use when adding logging, metrics, tracing, or alerting. Use when shipping any feature that runs in production and you need evidence it works. Use when production issues are reported but you can't tell what happened from the available data.Votes: 0GitHub stars: 8
- Observational AstronomerExpert-thinking profile for Observational Astronomer (multi-wavelength observational / calibration & photometry / time-domain & transients / Bayesian inference / multi- messenger): Reasons from radiative transfer, the distance ladder, and statistical- versus-systematic error budgets through HST/JWST/ALMA pipelines, Gaia DR3 astrometry, archives (SIMBAD, MAST, HEASARC), and emcee/dynesty inference while treating the look- elsewhere effect, PSF and flat-field artifacts, photo-z catastrophic...Votes: 0GitHub stars: 8
- Obsidian CliInteract with Obsidian vaults using the Obsidian CLI to read, create, search, and manage notes, tasks, properties, and more. Also supports plugin and theme development with commands to reload plugins, run JavaScript, capture errors, take screenshots, and inspect the DOM. Use when the user asks to interact with their Obsidian vault, manage notes, search vault content, perform vault operations from the command line, or develop and debug Obsidian plugins and themes.Votes: 0GitHub stars: 8
- Occupational Health ScientistExpert-thinking profile for Occupational Health Scientist (industrial hygiene / exposure assessment / occupational epidemiology / sampling and OELs (PEL, TLV, REL) / hierarchy of controls): Reasons from exposure route and receptor, dose-response, and the hierarchy of controls through SEG-based personal sampling, NIOSH/OSHA analytical methods, AIHA Bayesian exceedance statistics, and SMR cohort analysis, while treating healthy worker effect, below-LOD censoring, fraction-size and OEL mismatch,...Votes: 0GitHub stars: 8
- OceanographerExpert-thinking profile for Oceanographer (seagoing / interdisciplinary / water-mass & tracer analysis / air-sea flux & biogeochemistry / TEOS-10): Reasons from basin-scale budgets, three-dimensional circulation, and forcing-transport-transformation coupling through θ–S and OMP water-mass analysis, transient-tracer ventilation ages (CFC/SF₆/¹⁴C), GO-SHIP/Argo/SOCAT networks, and TEOS-10 thermodynamics while treating mesoscale aliasing of single sections, mixed...Votes: 0GitHub stars: 8
- Officecli Academic PaperUse this skill to build academic-style .docx output: journal / conference / thesis chapters carrying formal citation style (APA, Chicago, IEEE, MLA), numbered equations, figure & table cross-references, footnotes/endnotes, bibliography, or multi-column journal layout. Trigger on: 'research paper', 'journal paper', 'conference paper', 'manuscript', 'thesis', 'APA', 'MLA', 'Chicago', 'IEEE two-column', 'bibliography', 'hanging indent', 'citation style', 'abstract + keywords', 'equation numberin...Votes: 0GitHub stars: 8
- Officecli Data DashboardUse this skill to build a multi-element Excel dashboard — Dashboard sheet on open, multiple formula-driven KPI cards, multiple charts, sparklines, and conditional formatting — from CSV or tabular input. Trigger on: 'dashboard', 'KPI dashboard', 'analytics dashboard', 'executive dashboard', 'metrics dashboard', 'CSV to dashboard', 'data visualization'. Output is a single .xlsx. Scene-layer on officecli-xlsx: inherits every xlsx hard rule. DO NOT invoke for: a single budget tracker / one-sheet ...Votes: 0GitHub stars: 8