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Autoprotocol Experiment Plan Starter

ASecurity

Use this skill to generate a deterministic Autoprotocol JSON plan for a small liquid-handling experiment and inspect a concise execution summary.

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  • Added September 8, 2026
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Scanned September 8, 2026

npx -y skills add ma-compbio-lab/SkillFoundry --skill autoprotocol-experiment-plan-starter --agent claude-code

Installs into .claude/skills of the current project.

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SKILL.md
# Autoprotocol Experiment Plan Starter

Use this skill to generate a deterministic Autoprotocol JSON plan for a small liquid-handling experiment and inspect a concise execution summary.

## What This Skill Does

- reads a simple transfer plan from TSV
- constructs an Autoprotocol `Protocol` with source and assay plates
- emits machine-readable protocol JSON plus a compact summary of refs and operations

## When To Use It

- when you need a runnable `robotic-experiment-planning` starter
- when you want a local machine-readable lab plan before targeting a specific robot platform
- when you need deterministic protocol artifacts for repository tests

## Run

```bash
./slurm/envs/instrumentation/bin/python skills/robotics-lab-automation-and-scientific-instrumentation/autoprotocol-experiment-plan-starter/scripts/build_autoprotocol_experiment_plan.py \
  --transfers skills/robotics-lab-automation-and-scientific-instrumentation/autoprotocol-experiment-plan-starter/examples/toy_transfers.tsv \
  --protocol-json scratch/instrumentation/autoprotocol_plan.json \
  --summary-out scratch/instrumentation/autoprotocol_plan_summary.json
```

## Notes

- This skill only creates a protocol specification; it does not execute wet-lab work.
- The transfer plan is intentionally small and deterministic so the generated JSON stays stable across runs.

Files in this skill

  • SKILL.md1.3 KB
  • assets/toy_autoprotocol_plan_summary.json449 B
  • examples/toy_transfers.tsv54 B
  • metadata.yaml1.7 KB
  • refs.md237 B
  • scripts/build_autoprotocol_experiment_plan.py4.1 KB
  • tests/test_build_autoprotocol_experiment_plan.py2.6 KB

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