All authors
Claude Skills by ma-compbio-lab
github.com/ma-compbio-lab267 skills0 installs392 views
- Agronomic Experiment Design StarterUse this starter when a task lands in the `Agronomic experiment design` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Crop Genomics And Breeding StarterUse this starter when a task lands in the `Crop genomics and breeding` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Disease And Stress Detection StarterUse this starter when a task lands in the `Disease and stress detection` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Food Chemistry And Quality Modeling StarterUse this starter when a task lands in the `Food chemistry and quality modeling` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Plantcv Plant Phenotyping StarterUse this skill to generate a tiny synthetic plant image, segment it with `PlantCV`, and summarize simple morphology-style phenotyping measurements.Votes: 0GitHub stars: 38
- Precision Agriculture Sensing StarterUse this starter when a task lands in the `Precision agriculture sensing` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Soil Rhizosphere Microbiome Analysis StarterUse this starter when a task lands in the `Soil / rhizosphere / microbiome analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Yield Forecasting StarterUse this starter when a task lands in the `Yield forecasting` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Clinicaltrials Study SearchUse this skill to search the current ClinicalTrials.gov v2 API for condition or keyword matches when you need official clinical-study metadata. Do not use it for legacy API URLs or offline work.Votes: 0GitHub stars: 38
- Ehr Preprocessing StarterUse this starter when a task lands in the `EHR preprocessing` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Fairlearn Bias Audit StarterUse this skill to run a deterministic group fairness audit over a tiny clinical toy cohort with `fairlearn`.Votes: 0GitHub stars: 38
- Lifelines Kaplan Meier StarterUse this skill to run a deterministic Kaplan-Meier survival analysis over a toy cohort and summarize per-group survival curves.Votes: 0GitHub stars: 38
- Missing Data Handling StarterUse this starter when a task lands in the `Missing-data handling` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Phenotyping StarterUse this starter when a task lands in the `Phenotyping` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Privacy Preserving Analysis StarterUse this starter when a task lands in the `Privacy-preserving analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Time Series Clinical Modeling StarterUse this starter when a task lands in the `Time-series clinical modeling` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Ase Geometry Optimization StarterUse this skill to optimize a tiny argon dimer with ASE and summarize the final geometry.Votes: 0GitHub stars: 38
- Deepchem Molgraph FeaturizationUse this skill to featurize SMILES strings into DeepChem molecular graph objects. Prefer it for local graph-based preprocessing before molecular machine-learning experiments.Votes: 0GitHub stars: 38
- Free Energy Workflows StarterUse this starter when a task lands in the `Free-energy workflows` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Openmm Forcefield Assignment StarterUse this skill to assign a simple water force field to a tiny PDB topology with OpenMM and summarize the resulting system.Votes: 0GitHub stars: 38
- Openmm Langevin Dynamics StarterUse this skill to run a deterministic toy Langevin dynamics simulation in OpenMM and inspect a compact trajectory summary.Votes: 0GitHub stars: 38
- Openmm System MinimizationUse this skill to run a deterministic OpenMM energy minimization on a tiny toy system. Do not use it for production molecular dynamics or force-field validation.Votes: 0GitHub stars: 38
- Psi4 Single Point EnergyUse this skill to run a deterministic Psi4 single-point Hartree-Fock energy on a tiny water molecule. Do not use it for production quantum chemistry benchmarking or large basis-set studies.Votes: 0GitHub stars: 38
- Qm Mm Workflows StarterUse this starter when a task lands in the `QM/MM workflows` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Quantum Chemistry Setup StarterUse this starter when a task lands in the `Quantum chemistry setup` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Rdkit Conformer Generation StarterUse this skill to generate a small deterministic conformer ensemble with RDKit ETKDG and summarize the lowest-energy structures.Votes: 0GitHub stars: 38
- Trajectory Analysis StarterUse this starter when a task lands in the `Trajectory analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Biosamples Sample SearchUse this skill to search EBI BioSamples for public sample metadata by text query or lightweight filters and return compact summaries.Votes: 0GitHub stars: 38
- Frictionless Tabular Validation StarterUse this skill to validate a small CSV or TSV table against a simple Frictionless schema and emit a compact machine-readable error summary.Votes: 0GitHub stars: 38
- Metadata Harmonization StarterUse this skill to harmonize small metadata tables with inconsistent column names and categorical labels into one canonical TSV plus a compact JSON summary.Votes: 0GitHub stars: 38
- Numcodecs Compression Decompression StarterUse this skill to round-trip a small integer matrix through a deterministic `numcodecs` compressor and inspect the encoded payload summary.Votes: 0GitHub stars: 38
- Pyarrow Format Conversion StarterUse this skill to convert a small tabular file into Parquet with PyArrow and inspect a deterministic round-trip summary.Votes: 0GitHub stars: 38
- Rocrate Metadata Bundle StarterUse this skill to package a small local data file into an RO-Crate directory with basic provenance-rich metadata and a compact summary of the generated graph.Votes: 0GitHub stars: 38
- Synthetic Toy Dataset Generator StarterUse this skill to generate a deterministic tiny dataset bundle for tests, demos, and smoke fixtures.Votes: 0GitHub stars: 38
- Zarr Chunked Array Store StarterUse this skill to convert a small numeric matrix into a chunked, compressed Zarr store and inspect a deterministic summary of its layout.Votes: 0GitHub stars: 38
- Admet Modeling StarterUse this starter when a task lands in the `ADMET modeling` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Benchmarks And Evaluation StarterUse this starter when a task lands in the `Benchmarks and evaluation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Chembl Molecule SearchUse this skill to search ChEMBL molecules by keyword and return a compact compound summary. Do not use it for local chemistry calculations or unsupported bulk export.Votes: 0GitHub stars: 38
- Deepchem Circular FeaturizationUse this skill to compute compact DeepChem circular fingerprints from a small set of SMILES strings with the repo-managed DeepChem prefix. Do not use it for model training, docking, or large library screening.Votes: 0GitHub stars: 38
- Molecular Generation StarterUse this starter when a task lands in the `Molecular generation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Qsar Property Prediction StarterUse this starter when a task lands in the `QSAR / property prediction` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Rdkit Molecular DescriptorsUse this skill to compute compact cheminformatics descriptors from one SMILES string with RDKit. Do not use it for docking, quantum chemistry, or large library screening.Votes: 0GitHub stars: 38
- Rdkit Molecule StandardizationUse this skill to standardize one small-molecule SMILES string with RDKit MolStandardize. It is for local cleanup, salt stripping, uncharging, and tautomer canonicalization, not docking or batch-library processing.Votes: 0GitHub stars: 38
- Rdkit Scaffold Analysis StarterUse this skill to compute Murcko scaffold summaries for a small local molecule set with RDKit. Prefer it for deterministic scaffold grouping and smoke-scale cheminformatics checks.Votes: 0GitHub stars: 38
- Virtual Screening StarterUse this starter when a task lands in the `Virtual screening` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Climate Reanalysis Access StarterUse this starter when a task lands in the `Climate reanalysis access` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Geopandas Spatial Join StarterUse this skill to run a deterministic point-in-polygon join with GeoPandas and summarize the result in compact JSON.Votes: 0GitHub stars: 38
- Physics Informed Forecasting StarterUse this starter when a task lands in the `Physics-informed forecasting` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Raster Vector Ingestion StarterUse this starter when a task lands in the `Raster / vector ingestion` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Rasterio Windowed Raster Preprocessing StarterUse this skill to generate a tiny toy raster with Rasterio, extract a window, downsample it, and summarize the preprocessing result in compact JSON.Votes: 0GitHub stars: 38