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Zarr Chunked Array Store Starter

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Use this skill to convert a small numeric matrix into a chunked, compressed Zarr store and inspect a deterministic summary of its layout.

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  • Added September 8, 2026
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Scanned September 8, 2026

npx -y skills add ma-compbio-lab/SkillFoundry --skill zarr-chunked-array-store-starter --agent claude-code

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SKILL.md
# Zarr Chunked Array Store Starter

Use this skill to convert a small numeric matrix into a chunked, compressed Zarr store and inspect a deterministic summary of its layout.

## What This Skill Does

- reads a toy tabular matrix
- writes a local Zarr v2 array with fixed chunking and Blosc compression
- reports shape, chunk layout, compressor choice, and summary statistics

## When To Use It

- when you need a starter for `chunking-sharding`
- when you want a repo-local example of Zarr plus `numcodecs`
- when you need a tiny test fixture for chunked scientific array storage

## Run

```bash
python3 skills/data-acquisition-and-dataset-handling/zarr-chunked-array-store-starter/scripts/run_zarr_chunked_array_store.py --input skills/data-acquisition-and-dataset-handling/zarr-chunked-array-store-starter/examples/toy_matrix.tsv --store-out scratch/zarr/toy_matrix.zarr --summary-out scratch/zarr/toy_matrix_summary.json
```

## Notes

- The starter writes Zarr format 2 explicitly so classic compressor settings remain deterministic.
- The example is intentionally tiny and local; scale chunking decisions against real workloads before production use.

Files in this skill

  • SKILL.md1.1 KB
  • assets/toy_matrix_summary.json575 B
  • examples/toy_matrix.tsv63 B
  • metadata.yaml1.4 KB
  • refs.md199 B
  • scripts/run_zarr_chunked_array_store.py4.7 KB
  • tests/test_run_zarr_chunked_array_store.py2.3 KB

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