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Biosamples Sample Search

ASecurity

Use this skill to search EBI BioSamples for public sample metadata by text query or lightweight filters and return compact summaries.

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  • Added September 8, 2026
ai-agentspythonapi

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  • api

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Scanned September 8, 2026

npx -y skills add ma-compbio-lab/SkillFoundry --skill biosamples-sample-search --agent claude-code

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SKILL.md
---
name: biosamples-sample-search
description: Use this skill to search EBI BioSamples for public sample metadata by text query or lightweight filters and return compact summaries.
---

## Purpose
Search public sample metadata through the official EBI BioSamples API.

## When to use
- You need a quick metadata-discovery skill for public biospecimens.
- You want sample accessions, organism hints, and a few normalized characteristics.

## When not to use
- You need full sample graph traversal or submission workflows.
- You need to download raw experimental data instead of metadata.

## Inputs
- A free-text search string.
- Optional page and page-size controls.

## Outputs
- A JSON summary with BioSamples accessions and normalized characteristics.

## Requirements
- Network access to `ebi.ac.uk`
- Python standard library only

## Provenance
- BioSamples API overview: https://www.ebi.ac.uk/biosamples/docs/references/api/overview

Files in this skill

  • SKILL.md940 B
  • assets/README.md82 B
  • assets/breast_cancer_sample.json895 B
  • examples/README.md77 B
  • metadata.yaml1.1 KB
  • refs.md209 B
  • scripts/search_biosamples_samples.py6.2 KB
  • tests/test_search_biosamples_samples.py1.4 KB

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