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Claude Skills by ma-compbio-lab
github.com/ma-compbio-lab267 skills0 installs392 views
- Scientific Map And Dashboard Generation StarterUse this starter when a task lands in the `Scientific map and dashboard generation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Spatial Interpolation And Uncertainty StarterUse this starter when a task lands in the `Spatial interpolation and uncertainty` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Xarray Climate Cube StarterUse this skill to build a deterministic toy climate cube with Xarray and summarize simple spatiotemporal statistics.Votes: 0GitHub stars: 38
- Climate Ecology Integration StarterUse this starter when a task lands in the `Climate-ecology integration` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Conservation Genomics And Edna StarterUse this starter when a task lands in the `Conservation genomics and eDNA` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Ecosystem Remote Sensing StarterUse this starter when a task lands in the `Ecosystem remote sensing` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Gbif Dataset Search StarterUse this skill to query the official GBIF dataset-search API and summarize a small biodiversity dataset result set.Votes: 0GitHub stars: 38
- Gbif Species Occurrence Search StarterUse this skill to query the official GBIF API for a canonical species match and a small live occurrence sample.Votes: 0GitHub stars: 38
- Population Dynamics And Ecological Forecasting StarterUse this starter when a task lands in the `Population dynamics and ecological forecasting` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Scikitbio Tree Comparison StarterUse this skill to parse two small Newick trees with `scikit-bio` and summarize a compact topology-comparison result.Votes: 0GitHub stars: 38
- Wildlife Sensing And Bioacoustics StarterUse this starter when a task lands in the `Wildlife sensing and bioacoustics` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Atac Seq StarterUse this starter when a task lands in the `ATAC-seq` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Chip Seq StarterUse this starter when a task lands in the `ChIP-seq` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Cooler Hic Matrix Summary StarterUse this skill to generate or inspect a tiny Hi-C contact matrix in Cooler format and summarize its bins and pixel counts in JSON.Votes: 0GitHub stars: 38
- Cut Run Cut Tag StarterUse this starter when a task lands in the `CUT&RUN / CUT&Tag` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Encode Experiment SearchUse this skill to search ENCODE experiments by assay or free-text keyword and return compact metadata summaries for public epigenomics records.Votes: 0GitHub stars: 38
- Footprinting StarterUse this starter when a task lands in the `Footprinting` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Macs3 Peak Calling StarterUse this skill to run a deterministic toy peak-calling example with `MACS3 callpeak`.Votes: 0GitHub stars: 38
- Methylation Analysis StarterUse this starter when a task lands in the `Methylation analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Motif Analysis StarterUse this starter when a task lands in the `Motif analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Multiome Integration StarterUse this starter when a task lands in the `Multiome integration` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Bcftools Variant Filtering StarterUse this skill to run a deterministic `bcftools view` filtering example on a tiny VCF and capture the kept variants in a compact JSON summary.Votes: 0GitHub stars: 38
- Comparative Genomics StarterUse this starter when a task lands in the `Comparative genomics` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Ensembl Gene LookupUse this skill to resolve a gene symbol to Ensembl IDs and fetch a canonical Ensembl gene record. Do not use it for full transcript annotation pipelines or offline work.Votes: 0GitHub stars: 38
- Fastqc Multiqc Read Qc StarterUse this skill to run a deterministic read-QC pass with FastQC and aggregate the result with MultiQC on a tiny FASTQ example.Votes: 0GitHub stars: 38
- Fine Mapping StarterUse this starter when a task lands in the `Fine mapping` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Germline Pipelines StarterUse this starter when a task lands in the `Germline pipelines` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Gwas StarterUse this skill to run a deterministic local pass over GWAS summary statistics, flag common QC issues, and emit a compact interpretation plan for downstream clumping, heritability, and functional follow-up.Votes: 0GitHub stars: 38
- Long Read Genomics StarterUse this starter when a task lands in the `Long-read genomics` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Minimap2 Read Mapping StarterUse this skill to align a tiny FASTQ file against a small reference with `minimap2`, sort and index the resulting BAM, and summarize the alignments.Votes: 0GitHub stars: 38
- Ncbi Gene SearchUse this skill to search NCBI Gene by symbol and organism, then fetch compact official Entrez Gene summaries. Do not use it for variant interpretation, transcript-level modeling, or bulk offline annotation.Votes: 0GitHub stars: 38
- Phylogenomics StarterUse this starter when a task lands in the `Phylogenomics` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Polygenic Risk Scoring StarterUse this starter when a task lands in the `Polygenic risk scoring` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Pysam Sam Bam Summary StarterUse this skill to read a small SAM, BAM, or CRAM file with `pysam`, summarize core alignment statistics, and optionally emit an indexed BAM artifact for downstream debugging or demos.Votes: 0GitHub stars: 38
- Quantification StarterUse this starter when a task lands in the `Quantification` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Somatic Pipelines StarterUse this starter when a task lands in the `Somatic pipelines` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Sourmash Signature Compare StarterUse this skill to compute deterministic MinHash signatures for two tiny DNA sequences with sourmash and summarize their similarity in compact JSON.Votes: 0GitHub stars: 38
- Variant Calling StarterUse this starter when a task lands in the `Variant calling` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Cluster Safe Installs StarterUse this starter when a task lands in the `Cluster-safe installs` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Cpu Memory Tuning StarterUse this starter when a task lands in the `CPU / memory tuning` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Gpu Jobs StarterUse this starter when a task lands in the `GPU jobs` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- I O Aware Workflows StarterUse this starter when a task lands in the `I/O-aware workflows` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Interactive Debug Workflows StarterUse this starter when a task lands in the `Interactive debug workflows` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Multi Node Jobs StarterUse this starter when a task lands in the `Multi-node jobs` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Scratch Space Usage StarterUse this starter when a task lands in the `Scratch-space usage` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Slurm Job Array StarterUse this skill to submit a tiny real Slurm job array, wait for terminal accounting, and summarize per-task outputs in compact JSON.Votes: 0GitHub stars: 38
- Slurm Job Debug TemplateUse this skill to render, submit, and inspect a minimal Slurm smoke job before submitting heavier workloads on a real cluster.Votes: 0GitHub stars: 38
- Slurm Monitoring Accounting StarterUse this skill to submit a tiny probe job, capture live `squeue` snapshots while it waits or runs, and then summarize final `sacct` accounting.Votes: 0GitHub stars: 38
- Cell Tracking StarterUse this starter when a task lands in the `Cell tracking` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Microscopy Pipelines StarterUse this starter when a task lands in the `Microscopy pipelines` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38