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Claude Skills by ma-compbio-lab
github.com/ma-compbio-lab267 skills0 installs392 views
- Interface Analysis StarterUse this starter when a task lands in the `Interface analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Interpro Entry SummaryUse this skill to fetch a protein family or domain entry from the official InterPro API and summarize its key metadata.Votes: 0GitHub stars: 38
- Ms Proteomics Preprocessing StarterUse this starter when a task lands in the `MS proteomics preprocessing` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Pride Project SearchUse this skill to search PRIDE Archive v2 proteomics projects by keyword and return compact dataset-discovery summaries. Do not use it for raw file download orchestration or unsupported PRIDE endpoints.Votes: 0GitHub stars: 38
- Protein Embeddings StarterUse this starter when a task lands in the `Protein embeddings` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Protein Identification Quantification StarterUse this starter when a task lands in the `Protein identification / quantification` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Protein Language Model Function Analysis StarterUse this skill to validate protein FASTA inputs, extract deterministic smoke-safe embeddings, and run a reusable sequence-to-function triage flow that can later be swapped onto real ESM-2 or ProtT5 backends.Votes: 0GitHub stars: 38
- Protein Structure Cross Links StarterUse this starter when a task lands in the `Protein structure cross-links` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Ptm Analysis StarterUse this starter when a task lands in the `PTM analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Sequence To Function Modeling StarterUse this starter when a task lands in the `Sequence-to-function modeling` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Uniprot Sequence Feature Annotation StarterUse this skill to fetch a UniProtKB accession from the official UniProt REST API and summarize its sequence features into compact JSON.Votes: 0GitHub stars: 38
- Conda Mamba Pixi Uv StarterUse this starter when a task lands in the `Conda / Mamba / Pixi / uv` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Cwl Commandlinetool StarterUse this skill to author and run a minimal Common Workflow Language CommandLineTool and one-step workflow with cwltool. Do not use it for containerized production execution or complex scatter/gather workflows.Votes: 0GitHub stars: 38
- Cwl Workflows StarterUse this starter when a task lands in the `CWL workflows` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Docker Apptainer Singularity StarterUse this starter when a task lands in the `Docker / Apptainer / Singularity` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Environment Locking StarterUse this starter when a task lands in the `Environment locking` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Github Actions Scientific Ci StarterUse this skill to generate a repository-aware GitHub Actions workflow that runs validation, site generation, tests, and a small smoke subset for this project.Votes: 0GitHub stars: 38
- Nextflow Hello WorkflowUse this skill to run a minimal Nextflow workflow through the repo-managed Java and Nextflow prefix, either locally or on the Slurm cluster. Do not use it for containerized production pipelines.Votes: 0GitHub stars: 38
- Nf Core Pipeline ListUse this skill to verify the repo-managed nf-core tools install and retrieve a cleaned summary of available pipelines. Do not use it for interactive launch flows or full pipeline downloads.Votes: 0GitHub stars: 38
- Papermill Parameterized Notebook StarterUse this skill to execute a tiny parameterized notebook with Papermill and capture a deterministic summary plus the rendered output notebook.Votes: 0GitHub stars: 38
- Snakemake Toy Workflow StarterUse this skill to run a tiny Snakemake workflow through the repo-managed Snakemake prefix and inspect deterministic toy outputs.Votes: 0GitHub stars: 38
- Wdl Task StarterUse this skill to author and run a minimal WDL task and workflow with miniwdl. Do not use it for Cromwell-specific backends or large imported workflow graphs.Votes: 0GitHub stars: 38
- Wdl Workflows StarterUse this starter when a task lands in the `WDL workflows` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Workflow Interoperability And Translation StarterUse this starter when a task lands in the `Workflow interoperability and translation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Active Learning Experiment Loops StarterUse this starter when a task lands in the `Active-learning experiment loops` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Automated Microscopy Acquisition StarterUse this starter when a task lands in the `Automated microscopy acquisition` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Autoprotocol Experiment Plan StarterUse this skill to generate a deterministic Autoprotocol JSON plan for a small liquid-handling experiment and inspect a concise execution summary.Votes: 0GitHub stars: 38
- Closed Loop Optimization For Experiments StarterUse this starter when a task lands in the `Closed-loop optimization for experiments` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Eln Lims Sample Tracking Integration StarterUse this starter when a task lands in the `ELN / LIMS / sample-tracking integration` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Laboratory Robotics Safety And Monitoring StarterUse this starter when a task lands in the `Laboratory robotics safety and monitoring` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Opentrons Liquid Handling Protocol StarterUse this skill to generate a minimal Opentrons Protocol API transfer script and verify it through the local simulator.Votes: 0GitHub stars: 38
- Qcodes Parameter Sweep StarterUse this skill to run a tiny deterministic parameter sweep with `QCoDeS`, persist the measurements to a local dataset database, and summarize the recorded sweep.Votes: 0GitHub stars: 38
- Code Generation Agents For Scientific Tasks StarterUse this starter when a task lands in the `Code-generation agents for scientific tasks` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Inspect Evaluation Harness StarterUse this skill to run a deterministic Inspect evaluation harness over toy scientific-agent cases and compare a candidate solver against a weaker baseline.Votes: 0GitHub stars: 38
- Langgraph Planning Execution Agent StarterUse this skill to decompose a scientific task into deterministic step queries, route each step to candidate local skills, and return an execution-ready plan.Votes: 0GitHub stars: 38
- Literature To Hypothesis Agents StarterUse this starter when a task lands in the `Literature-to-hypothesis agents` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Long Horizon Agent Memory And Provenance StarterUse this starter when a task lands in the `Long-horizon agent memory and provenance` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Skill Registry Router StarterUse this skill to route a free-text scientific task query to the most relevant skills in the local registry.Votes: 0GitHub stars: 38
- Tool Using Analysis Agents StarterUse this starter when a task lands in the `Tool-using analysis agents` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Workflow Generation Agents StarterUse this starter when a task lands in the `Workflow generation agents` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Automatic Differentiation For Scientific Models StarterUse this starter when a task lands in the `Automatic differentiation for scientific models` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Chaospy Uncertainty Propagation StarterUse this skill to run a deterministic uncertainty-propagation toy workflow with Chaospy and inspect a machine-readable summary of the propagated response distribution.Votes: 0GitHub stars: 38
- Differentiable Programming For Simulators StarterUse this starter when a task lands in the `Differentiable programming for simulators` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Fipy Diffusion Pde StarterUse this skill to solve a tiny 1D diffusion problem with `FiPy` and summarize the evolution of the profile.Votes: 0GitHub stars: 38
- Inverse Problems And Data Assimilation StarterUse this starter when a task lands in the `Inverse problems and data assimilation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Numerical Benchmarking And Verification StarterUse this starter when a task lands in the `Numerical benchmarking and verification` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Scipy Ode Simulation StarterUse this skill to integrate a deterministic predator-prey ordinary differential equation with `scipy.integrate.solve_ivp` and return a compact trajectory summary.Votes: 0GitHub stars: 38
- Sparse Iterative Linear Algebra StarterUse this starter when a task lands in the `Sparse / iterative linear algebra` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38
- Benchmark Table Mining StarterParse small benchmark markdown tables from paper notes and summarize datasets, metrics, and best-performing methods.Votes: 0GitHub stars: 38
- Claim Assumption Limitation Extraction StarterUse this starter when a task lands in the `Claim / assumption / limitation extraction` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.Votes: 0GitHub stars: 38