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Fipy Diffusion Pde Starter

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Use this skill to solve a tiny 1D diffusion problem with `FiPy` and summarize the evolution of the profile.

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  • Added September 8, 2026
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Scanned September 8, 2026

npx -y skills add ma-compbio-lab/SkillFoundry --skill fipy-diffusion-pde-starter --agent claude-code

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SKILL.md
# FiPy Diffusion PDE Starter

Use this skill to solve a tiny 1D diffusion problem with `FiPy` and summarize the evolution of the profile.

## What it does

- Builds a small 1D mesh with an initially occupied left boundary slab.
- Solves a transient diffusion equation for a few deterministic time steps.
- Reports mass conservation, center-cell value, and the leading edge of the diffused profile in JSON.

## When to use it

- You need a runnable starter for `PDE discretization and solvers`.
- You want a verified local PDE example before moving to heavier finite-element toolchains.

## Example

```bash
slurm/envs/numerics/bin/python skills/scientific-computing-and-numerical-methods/fipy-diffusion-pde-starter/scripts/run_fipy_diffusion_pde.py \
  --out scratch/numerics/fipy_diffusion_summary.json
```

## Verification

- Skill-local tests: `python3 -m unittest discover -s skills/scientific-computing-and-numerical-methods/fipy-diffusion-pde-starter/tests -p 'test_*.py'`
- Repository smoke: `python3 -m unittest tests.smoke.test_phase31_frontier_leaf_conversion_skills -v`

Files in this skill

  • SKILL.md1.1 KB
  • assets/README.md81 B
  • assets/fipy_diffusion_summary.json237 B
  • examples/README.md109 B
  • metadata.yaml1.2 KB
  • refs.md149 B
  • scripts/run_fipy_diffusion_pde.py1.6 KB
  • tests/test_run_fipy_diffusion_pde.py1.3 KB

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