Skip to content
Back to skills

Metabolights Study Search

ASecurity

Use this skill to search MetaboLights studies and resolve a compact summary for each matched accession through the official JSON API.

  • 38 stars
  • 0 votes
  • 0 copies
  • 1 view
  • Added September 8, 2026
ai-agentspythonapi

Works with

  • api

Security analysis

A100/100

Pro scans all 8 files and shows the line behind each finding

Scanned September 8, 2026

npx -y skills add ma-compbio-lab/SkillFoundry --skill metabolights-study-search --agent claude-code

Installs into .claude/skills of the current project.

Are you the author of Metabolights Study Search?

Add the live security badge to your README. It updates with every re-scan.

Security grade badge for Metabolights Study Search
[![Security: A — Skills Directory](https://www.skillsdirectory.com/api/skills/ma-compbio-lab-metabolights-study-search/badge)](https://www.skillsdirectory.com/skills/ma-compbio-lab-metabolights-study-search)

More formats (shields.io, HTML) on the badges page. Keep it an A: scan every change in CI with Pro.

Download with Pro
SKILL.md
---
name: metabolights-study-search
description: Use this skill to search MetaboLights studies and resolve a compact summary for each matched accession through the official JSON API.
---

## Purpose
Search public metabolomics studies through the official MetaboLights API and summarize matched study metadata.

## When to use
- You need a lightweight metabolomics dataset-discovery starter.
- You want study accessions, titles, factors, and release metadata without manually browsing the portal.

## When not to use
- You need full ISA parsing for every assay, source, and sample table.
- You need raw metabolomics files or downstream analysis workflows.

## Inputs
- A free-text study query such as `diabetes`.
- Small page and row limits.

## Outputs
- A JSON summary with study accessions and compact metadata.

## Requirements
- Network access to `ebi.ac.uk`
- Python standard library only

## Provenance
- MetaboLights API Swagger UI: https://www.ebi.ac.uk/metabolights/ws/api/spec.html

Files in this skill

  • SKILL.md992 B
  • assets/README.md84 B
  • assets/diabetes_study.json1.8 KB
  • examples/README.md96 B
  • metadata.yaml1 KB
  • refs.md274 B
  • scripts/search_metabolights_studies.py7.9 KB
  • tests/test_search_metabolights_studies.py2.3 KB

Attribution

Is this your skill, or is something wrong with this listing? Request removal or report an issue. Author removals are honored within 72 hours.

Comments

Loading comments…