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Claude Skills by FreedomIntelligence
github.com/FreedomIntelligence741 skills2 installs1,922 views
- Chemist AnalystAnalyzes events through chemistry lens using molecular structure, reaction mechanisms, thermodynamics, kinetics, and analytical techniques (spectroscopy, chromatography, mass spectrometry). Provides insights on chemical processes, material properties, reaction pathways, synthesis, and analytical methods. Use when: Chemical reactions, material analysis, synthesis planning, process optimization, environmental chemistry. Evaluates: Molecular structure, reaction mechanisms, yield, selectivity, sa...Votes: 0GitHub stars: 2,984
- Chemistry Agent--> --- name: chemistry-agent description: Autonomous chemical synthesis & analysis keywords: - chemistry - synthesis - molecules - reaction - lab-automation measurable_outcome: Successfully plans valid synthesis routes for 90% of target small molecules. license: MIT metadata: author: Biomedical OS Team version: "1.0.0" compatibility: - system: Python 3.10+ allowed-tools: - run_shell_command - read_file - write_file --- The Chemistry Agent is a specialized module for autonomous chemical reaso...Votes: 0GitHub stars: 2,984
- Chip Clonal Hematopoiesis Agent--> --- name: 'chip-clonal-hematopoiesis-agent' description: 'AI-powered clonal hematopoiesis of indeterminate potential (CHIP) detection, risk stratification, and cardiovascular/malignancy risk prediction using genomic and clinical data.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **CHIP Clonal Hematopoiesis Agent** provides comprehensive detection and risk stratification of clonal hemato...Votes: 0GitHub stars: 2,984
- Chromosomal Instability Agent--> --- name: 'chromosomal-instability-agent' description: 'AI-powered analysis of chromosomal instability (CIN) signatures for cancer prognosis, immunotherapy response prediction, and therapeutic vulnerability identification.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Chromosomal Instability Agent** analyzes CIN signatures to predict cancer prognosis, immunotherapy response, and therap...Votes: 0GitHub stars: 2,984
- Claims Appeals--> --- name: 'claims-appeals' description: 'Claims Appeals agent for healthcare workflows.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill implements the Claims Appeals workflow using Anthropic's Claude.Votes: 0GitHub stars: 2,984
- Claw Ancestry PcaAncestry decomposition PCA against the Simons Genome Diversity ProjectVotes: 0GitHub stars: 2,984
- Claw MetagenomicsShotgun metagenomics profiling — taxonomy, resistome, and functional pathwaysVotes: 0GitHub stars: 2,984
- Claw Semantic SimSemantic Similarity Index for disease research literature using PubMedBERT embeddingsVotes: 0GitHub stars: 2,984
- Clinical Diagnostic ReasoningIdentify and counteract cognitive biases in medical decision-making through systematic error analysis and contextual algorithm application. For diagnostic reasoning, treatment decisions, andVotes: 0GitHub stars: 2,984
- Clinical Nlp Extractor--> --- name: 'clinical-nlp-extractor' description: 'Extracts medical entities (Diseases, Medications, Procedures) from unstructured clinical text using regex and simple rules (or LLM wrappers).' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Clinical NLP Skill** converts free-text clinical notes into structured data. It identifies key medical entities like problems/diagnoses, medications, a...Votes: 0GitHub stars: 2,984
- Clinical Note Summarization--> --- name: clinical-note-summarization description: Structure raw clinical notes into SOAP-format summaries with explicit contradictions, missing data, and ICD-linked assessments using the provided prompt + usage script. allowed-tools: - read_file - run_shell_command ---Votes: 0GitHub stars: 2,984
- Clinical Trials SearchSearch ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic search.Votes: 0GitHub stars: 2,984
- ClinpgxQuery the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labelsVotes: 0GitHub stars: 2,984
- Cnv Caller Agent--> --- name: 'cnv-caller-agent' description: 'AI-enhanced copy number variation calling and analysis from sequencing data for cancer genomics, constitutional CNV detection, and chromosomal aberration characterization.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **CNV Caller Agent** provides comprehensive AI-enhanced copy number variation analysis from WGS, WES, and targeted sequencing for...Votes: 0GitHub stars: 2,984
- Coagulation Thrombosis Agent--> --- name: 'coagulation-thrombosis-agent' description: 'AI-powered analysis of coagulation disorders, thrombosis risk prediction, anticoagulation management, and platelet function assessment using machine learning.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Coagulation and Thrombosis Agent** provides AI-driven analysis of hemostatic disorders, thrombosis risk assessment, and anticoag...Votes: 0GitHub stars: 2,984
- Compbioagent Explorer--> --- name: compbioagent-explorer description: scRNA-seq Explorer keywords: - single-cell - visualization - web-app - cellxgene - exploration measurable_outcome: Launch a local web instance for interactive scRNA-seq exploration and generate 3+ custom visualizations per session. license: MIT metadata: author: CompBioAgent Team version: "1.0.0" compatibility: - system: Python 3.9+ allowed-tools: - run_shell_command - web_fetch --- An LLM-powered web application for single-cell RNA-seq data ex...Votes: 0GitHub stars: 2,984
- Computational Pathology Agent--> --- name: computational-pathology-agent description: Analyze Whole Slide Images (WSI) for digital pathology, including tissue segmentation and feature extraction. keywords: - wsi - digital-pathology - deep-learning - resnet - openslide measurable_outcome: Preprocess and extract tissue patches from a 1GB+ .svs slide within 15 minutes for downstream ML tasks. license: MIT metadata: author: MD BABU MIA, PhD version: "1.0.0" compatibility: - system: python 3.9+ allowed-tools: - run_shell_comm...Votes: 0GitHub stars: 2,984
- Convergence StudySpatial and temporal convergence analysis with Richardson extrapolation and Grid Convergence Index (GCI) for solution verificationVotes: 0GitHub stars: 2,984
- Crisis Detection Intervention AiDetect crisis signals in user content using NLP, mental health sentiment analysis, and safe intervention protocols. Implements suicide ideation detection, automated escalation, and crisis resourceVotes: 0GitHub stars: 2,984
- Crisis Response ProtocolHandle mental health crisis situations in AI coaching safely. Use when implementing crisis detection, safety protocols, emergency escalation, or suicide prevention features. Activates for crisisVotes: 0GitHub stars: 2,984
- Crispr Guide Design--> --- name: crispr-guide-design description: Guide foundry keywords: - CRISPR - sgRNA - Doench - off-target - oligos measurable_outcome: Return the requested number of guides (default ≥4) with efficiency + specificity scores, coordinates, and cloning oligos within 10 minutes per gene. license: MIT metadata: author: CRISPR-GPT Team version: "1.0.0" compatibility: - system: Python 3.10+ allowed-tools: - run_shell_command - read_file --- Automate sgRNA selection, scoring, off-target evaluation...Votes: 0GitHub stars: 2,984
- Crispr Offtarget Predictor--> --- name: 'crispr-offtarget-predictor' description: 'Predicts potential off-target sites for a given sgRNA sequence using mismatch analysis.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill identifies potential off-target binding sites for a specific sgRNA sequence. It helps researchers assess the specificity of their CRISPR design.Votes: 0GitHub stars: 2,984
- Cryoem Ai Drug Design Agent--> --- name: 'cryoem-ai-drug-design-agent' description: 'AI-powered integration of cryo-EM structural data with generative AI and molecular dynamics for structure-based drug design targeting flexible proteins and membrane complexes.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Cryo-EM AI Drug Design Agent** integrates cryo-electron microscopy structural data with AlphaFold3, generative A...Votes: 0GitHub stars: 2,984
- Ctdna Dynamics Mrd Agent--> --- name: 'ctdna-dynamics-mrd-agent' description: 'AI-powered circulating tumor DNA dynamics analysis for molecular residual disease detection, treatment response monitoring, and early relapse prediction using liquid biopsy.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **ctDNA Dynamics MRD Agent** provides comprehensive analysis of circulating tumor DNA dynamics for molecular residual d...Votes: 0GitHub stars: 2,984
- Cytokine Storm Analysis Agent--> --- name: 'cytokine-storm-analysis-agent' description: 'AI-powered cytokine release syndrome (CRS) and cytokine storm analysis for prediction, monitoring, and management in immunotherapy and infectious disease.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Cytokine Storm Analysis Agent** provides comprehensive AI-driven analysis of cytokine release syndrome (CRS) and hyperinflammatory ...Votes: 0GitHub stars: 2,984
- DaskDistributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core analytics on single machine use vaex; for in-memory speed use polars.Votes: 0GitHub stars: 2,984
- Data Stats AnalysisPerform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).Votes: 0GitHub stars: 2,984
- Data TransformTransform, clean, reshape, and preprocess data using pandas and numpy. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).Votes: 0GitHub stars: 2,984
- Data Visualization Biomedical--> --- name: data-visualization-biomedical description: "Publication-quality visualizations for biomedical and genomics data. Use when creating volcano plots, heatmaps, UMAP plots, dot plots, survival curves, forest plots, or multi-panel figures. Includes scanpy, matplotlib, seaborn, plotly workflows with journal-ready aesthetics and proper statistical annotations." license: Proprietary ---Votes: 0GitHub stars: 2,984
- Data Visualization Expert--> --- name: data-visualization-expert description: Generate insightful, publication-quality visualizations from complex datasets. keywords: - charts - plots - analysis - pandas - matplotlib - seaborn measurable_outcome: Create 3 high-resolution (300dpi) statistical plots (volcano, heatmap, scatter) within 15 minutes. license: MIT metadata: author: AI Agentic Skills Team version: "2.0.0" compatibility: - system: linux, macos allowed-tools: - run_shell_command - write_file - read_file --- A d...Votes: 0GitHub stars: 2,984
- Data Viz PlotsCreate publication-quality plots and visualizations using matplotlib and seaborn. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).Votes: 0GitHub stars: 2,984
- Datacommons ClientWork with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public datasets available through Data Commons. Applicable for querying population statistics, GDP figures, unemployment rates, disease prevalence, geographic entity resolution, and exploring relationships between statistical entities.Votes: 0GitHub stars: 2,984
- Deep Research Swarm--> --- name: deep-research-swarm description: Multi-agent research literature analysis keywords: - research - literature - swarm - multi-agent - hypothesis measurable_outcome: Generates comprehensive literature review with >50 citations in <5 minutes. license: MIT metadata: author: Biomedical OS Team version: "1.0.0" compatibility: - system: Python 3.10+ allowed-tools: - run_shell_command - read_file - google_web_search --- A coordinated swarm of agents designed to perform deep, parallelized...Votes: 0GitHub stars: 2,984
- Deep ResearchExecute autonomous multi-step deep research on any topic. Use when the user asks for comprehensive research, literature reviews, competitive analysis, topic deep-dives, or wants to understand a complex subject from multiple angles. Triggers on "deep research", "research on", "investigate", "literature review", "comprehensive analysis", "what do we know about", "summarize research on".Votes: 0GitHub stars: 2,984
- Deep Visual Proteomics Agent--> --- name: 'deep-visual-proteomics-agent' description: 'AI-driven integration of cellular imaging, laser microdissection, and ultra-sensitive mass spectrometry for spatially-resolved single-cell proteomics.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Deep Visual Proteomics Agent** implements the Deep Visual Proteomics (DVP) workflow that combines AI-driven image analysis of cellular p...Votes: 0GitHub stars: 2,984
- DepmapQuery the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use for identifying cancer-specific vulnerabilities, synthetic lethal interactions, and validating oncology drug targets.Votes: 0GitHub stars: 2,984
- Differentiation SchemesSelect and apply numerical differentiation schemes for PDE/ODE discretization. Use when choosing finite difference/volume/spectral schemes, building stencils, handling boundaries, estimating truncation error, or analyzing dispersion and dissipation.Votes: 0GitHub stars: 2,984
- Digital Twin Clinical Agent--> --- name: 'digital-twin-clinical-agent' description: 'AI-powered patient digital twin creation for clinical trial simulation, treatment outcome prediction, and personalized medicine using real-world data and multi-omics integration.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Digital Twin Clinical Agent** creates AI-powered virtual replicas of individual patients by integrating genom...Votes: 0GitHub stars: 2,984
- Drug Discovery SearchEnd-to-end drug discovery platform combining ChEMBL compounds, DrugBank, targets, and FDA labels. Natural language powered by Valyu.Votes: 0GitHub stars: 2,984
- Drug Interaction Checker--> --- name: 'drug-interaction-checker' description: 'Checks for potential drug-drug interactions (DDIs) between a list of medications.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill analyzes a list of medications to identify known interactions, focusing on safety and contraindications.Votes: 0GitHub stars: 2,984
- Drug Labels SearchSearch FDA drug labels with natural language queries. Official drug information, indications, and safety data via Valyu.Votes: 0GitHub stars: 2,984
- Drug PhotoMedication photo to personalised PGx dosage card via Claude vision — snap a pill, get genotype-informed guidanceVotes: 0GitHub stars: 2,984
- Drugbank SearchSearch DrugBank comprehensive drug database with natural language queries. Drug mechanisms, interactions, and safety data powered by Valyu.Votes: 0GitHub stars: 2,984
- Ehr Fhir Integration--> --- name: 'ehr-fhir-integration' description: 'Provides comprehensive tools for working with Electronic Health Records (EHR) using the HL7 FHIR standard.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **EHR/FHIR Integration Skill** enables AI agents to interact with FHIR servers to search, read, and analyze clinical data.Votes: 0GitHub stars: 2,984
- Epidemiologist AnalystAnalyzes disease patterns and health events through epidemiological lens using surveillance systems, outbreak investigation methods, and disease modeling frameworks. Provides insights on disease spread, risk factors, prevention strategies, and public health interventions. Use when: Disease outbreaks, health policy evaluation, risk assessment, intervention planning. Evaluates: Transmission dynamics, risk factors, causality, population health impact, intervention effectiveness.Votes: 0GitHub stars: 2,984
- Epigenomics Methylgpt Agent--> --- name: 'epigenomics-methylgpt-agent' description: 'AI-powered DNA methylation analysis using MethylGPT foundation models for epigenomic profiling, differential methylation detection, and cancer epigenome characterization.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Epigenomics MethylGPT Agent** leverages foundation models for comprehensive DNA methylation analysis. It integrates M...Votes: 0GitHub stars: 2,984
- Equity ScorerCompute HEIM diversity and equity metrics from VCF or ancestry data. Generates heterozygosity, FST, PCA plots, and a composite HEIM Equity Score with markdown reports.Votes: 0GitHub stars: 2,984
- Exosome Ev Analysis Agent--> --- name: 'exosome-ev-analysis-agent' description: 'AI-powered extracellular vesicle and exosome analysis for cancer biomarker discovery, liquid biopsy applications, and intercellular communication profiling.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Exosome/EV Analysis Agent** provides comprehensive AI-driven analysis of extracellular vesicles for cancer biomarker discovery, liqui...Votes: 0GitHub stars: 2,984
- Fastq AnalysisGuide through omicverse's alignment module for SRA downloading, FASTQ quality control, STAR alignment, gene quantification, and single-cell kallisto/bustools pipelines covering both bulk and single-cell RNA-seq workflows.Votes: 0GitHub stars: 2,984
- Fhir Developer SkillFHIR API development guide for building healthcare endpoints. Use when: (1) Creating FHIR REST endpoints (Patient, Observation, Encounter, Condition, MedicationRequest), (2) Validating FHIR resources and returning proper HTTP status codes and error responses, (3) Implementing SMART on FHIR authorization and OAuth scopes, (4) Working with Bundles, transactions, batch operations, or search pagination. Covers FHIR R4 resource structures, required fields, value sets (status codes, gender, intent)...Votes: 0GitHub stars: 2,984