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Claude Skills by FreedomIntelligence
github.com/FreedomIntelligence741 skills2 installs1,922 views
- Fhir Development--> --- name: 'fhir-development' description: 'FHIR Development agent for healthcare workflows.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill implements the FHIR Development workflow using Anthropic's Claude.Votes: 0GitHub stars: 2,984
- Galaxy BridgeGalaxy tool discovery, intelligent recommendation, and execution — 8,000+ bioinformatics tools from usegalaxy.org with multi-signal scoring and workflow suggestionsVotes: 0GitHub stars: 2,984
- Gene Panel Design Agent--> --- name: 'gene-panel-design-agent' description: 'AI-powered design of targeted gene panels for clinical and research applications including cancer diagnostics, pharmacogenomics, and rare disease testing.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Gene Panel Design Agent** provides AI-driven design of targeted sequencing panels for clinical diagnostics, cancer profiling, pharmacogen...Votes: 0GitHub stars: 2,984
- Genome CompareCompare your genome to George Church (PGP-1) and estimate ancestry composition via IBS and EM admixtureVotes: 0GitHub stars: 2,984
- Ginkgo Cloud LabSubmit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation Carts (RACs). Use when the user wants to run cell-free protein expression (validation or optimization), generate fluorescent pixel art, or interact with Ginkgo Cloud Lab services. Covers protocol selection, input preparation, pricing, and ordering workflows.Votes: 0GitHub stars: 2,984
- GlycoengineeringAnalyze and engineer protein glycosylation. Scan sequences for N-glycosylation sequons (N-X-S/T), predict O-glycosylation hotspots, and access curated glycoengineering tools (NetOGlyc, GlycoShield, GlycoWorkbench). For glycoprotein engineering, therapeutic antibody optimization, and vaccine design.Votes: 0GitHub stars: 2,984
- Gnomad DatabaseQuery gnomAD (Genome Aggregation Database) for population allele frequencies, variant constraint scores (pLI, LOEUF), and loss-of-function intolerance. Essential for variant pathogenicity interpretation, rare disease genetics, and identifying loss-of-function intolerant genes.Votes: 0GitHub stars: 2,984
- Grief CompanionCompassionate bereavement support, memorial creation, grief education, and healing journey guidance. Specializes in understanding grief stages, creating meaningful tributes, and supportingVotes: 0GitHub stars: 2,984
- Gsea EnrichmentGene set enrichment analysis with correct geneset format handling. Critical guidance for loading pathway databases and running enrichment in OmicVerse.Votes: 0GitHub stars: 2,984
- Gtex DatabaseQuery GTEx (Genotype-Tissue Expression) portal for tissue-specific gene expression, eQTLs (expression quantitative trait loci), and sQTLs. Essential for linking GWAS variants to gene regulation, understanding tissue-specific expression, and interpreting non-coding variant effects.Votes: 0GitHub stars: 2,984
- Gwas LookupFederated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, eQTL Catalogue, and more.Votes: 0GitHub stars: 2,984
- Gwas PrsCalculate polygenic risk scores from DTC genetic data using the PGS CatalogVotes: 0GitHub stars: 2,984
- Hemoglobinopathy Analysis Agent--> --- name: 'hemoglobinopathy-analysis-agent' description: 'AI-powered analysis of hemoglobin disorders including sickle cell disease, thalassemias, and variant hemoglobins using HPLC, electrophoresis, and molecular data.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Hemoglobinopathy Analysis Agent** provides comprehensive AI-driven analysis of hemoglobin disorders. It integrates HPLC ch...Votes: 0GitHub stars: 2,984
- Hipaa ComplianceEnsure HIPAA compliance when handling PHI (Protected Health Information). Use when writing code that accesses user health data, check-ins, journal entries, or any sensitive information. ActivatesVotes: 0GitHub stars: 2,984
- Hrd Analysis Agent--> --- name: 'hrd-analysis-agent' description: 'AI-powered homologous recombination deficiency (HRD) analysis for PARP inhibitor response prediction using genomic scarring signatures and BRCA pathway assessment.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **HRD Analysis Agent** provides comprehensive analysis of homologous recombination deficiency for predicting response to PARP inhibitor...Votes: 0GitHub stars: 2,984
- Hrv Alexithymia ExpertHeart rate variability biometrics and emotional awareness training. Expert in HRV analysis, interoception training, biofeedback, and emotional intelligence. Activate on 'HRV', 'heart rate variability',Votes: 0GitHub stars: 2,984
- Imaging Data CommonsQuery and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing large-scale radiology (CT, MR, PET) and pathology datasets for AI training or research. No authentication required. Query by metadata, visualize in browser, check licenses.Votes: 0GitHub stars: 2,984
- Immune Checkpoint Combination Agent--> --- name: 'immune-checkpoint-combination-agent' description: 'AI-powered analysis for predicting optimal immune checkpoint inhibitor combinations based on tumor microenvironment, biomarkers, and molecular profiling.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Immune Checkpoint Combination Agent** analyzes tumor molecular profiles to predict optimal immune checkpoint inhibitor (ICI) c...Votes: 0GitHub stars: 2,984
- Interpro DatabaseQuery InterPro for protein family, domain, and functional site annotations. Integrates Pfam, PANTHER, PRINTS, SMART, SUPERFAMILY, and 11 other member databases. Use for protein function prediction, domain architecture analysis, evolutionary classification, and GO term mapping.Votes: 0GitHub stars: 2,984
- Jaspar DatabaseQuery JASPAR for transcription factor binding site (TFBS) profiles (PWMs/PFMs). Search by TF name, species, or class; scan DNA sequences for TF binding sites; compare matrices; essential for regulatory genomics, motif analysis, and GWAS regulatory variant interpretation.Votes: 0GitHub stars: 2,984
- Jungian PsychologistExpert in Jungian analytical psychology, depth psychology, shadow work, archetypal analysis, dream interpretation, active imagination, addiction/recovery through Jungian lens, and the individuationVotes: 0GitHub stars: 2,984
- Knowledge Synthesis--> --- name: knowledge-synthesis description: Combines search results from multiple sources into coherent, deduplicated answers with source attribution. Handles confidence scoring based on freshness and authority, and summarizes large result sets effectively. keywords: - synthesis - deduplication - summarization - answers - reporting measurable_outcome: Produces a single coherent answer from >5 diverse sources with clear attribution and <10% duplication. allowed-tools: - read_file - run_shel...Votes: 0GitHub stars: 2,984
- Kragen Knowledge Graph--> --- name: kragen-knowledge-graph description: Graph-RAG Solver keywords: - knowledge-graph - RAG - reasoning - graph-of-thoughts - biomedical-qa measurable_outcome: Return a reasoning path and an answer supported by ≥3 knowledge graph nodes for complex biomedical questions with <5s latency. license: MIT metadata: author: Bioinformatics Oxford version: "1.0.0" compatibility: - system: Python 3.9+ allowed-tools: - run_shell_command - web_fetch --- A knowledge graph-enhanced Retrieval-Augmen...Votes: 0GitHub stars: 2,984
- Lab Results--> --- name: 'lab-results' description: 'Lab Results agent for healthcare workflows.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill implements the Lab Results workflow using Anthropic's Claude.Votes: 0GitHub stars: 2,984
- LabstepInteract with the Labstep electronic lab notebook API using labstepPy. Query experiments, protocols, resources, inventory, and other lab entities.Votes: 0GitHub stars: 2,984
- Latex PostersCreate professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.Votes: 0GitHub stars: 2,984
- Leads Literature Mining--> --- name: leads-literature-mining description: Review Automator keywords: - literature-mining - systematic-review - meta-analysis - pubmed - evidence-synthesis measurable_outcome: Complete a systematic review screen of 100+ papers with >90% inclusion/exclusion accuracy compared to human baseline. license: CC-BY-4.0 metadata: author: Nature Communications 2025 version: "1.0.0" compatibility: - system: Python 3.9+ allowed-tools: - run_shell_command - web_fetch --- A specialized LLM agent fo...Votes: 0GitHub stars: 2,984
- Linear SolversSelect and configure linear solvers for systems Ax=b in dense and sparse problems. Use when choosing direct vs iterative methods, diagnosing convergence issues, estimating conditioning, selecting preconditioners, or debugging stagnation in GMRES/CG/BiCGSTAB.Votes: 0GitHub stars: 2,984
- Liquid Biopsy Analytics Agent--> --- name: 'liquid-biopsy-analytics-agent' description: 'Comprehensive analysis of liquid biopsy data (ctDNA, CTCs) for cancer detection, MRD monitoring, and response tracking.' keywords: - liquid-biopsy - ctdna - mrd - cancer-detection - treatment-response measurable_outcome: 'Detects circulating tumor DNA with 0.01% sensitivity and accurately predicts treatment response in longitudinal samples.' allowed-tools: - read_file - run_shell_command --- The **Liquid Biopsy Analytics Agent** prov...Votes: 0GitHub stars: 2,984
- Lit SynthesizerSearch PubMed and bioRxiv, summarise papers with LLM, build citation graphs, and generate literature review sections.Votes: 0GitHub stars: 2,984
- Literature SearchComprehensive scientific literature search across PubMed, arXiv, bioRxiv, medRxiv. Natural language queries powered by Valyu semantic search.Votes: 0GitHub stars: 2,984
- Lobster BioinformaticsRun bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization. Use when analyzing genomics data, searching for papers/datasets, or working with H5AD, CSV, GEO/SRA accessions, or biological data. Requires lobster-ai package installed.Votes: 0GitHub stars: 2,984
- Long Read Sequencing Agent--> --- name: 'long-read-sequencing-agent' description: 'AI-powered analysis of long-read sequencing data (PacBio, ONT) for structural variant detection, isoform discovery, epigenetic modifications, and de novo assembly.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Long-Read Sequencing Agent** provides comprehensive AI-driven analysis of long-read sequencing data from PacBio (HiFi) and Ox...Votes: 0GitHub stars: 2,984
- Markdown Mermaid WritingComprehensive markdown and Mermaid diagram writing skill. Use when creating any scientific document, report, analysis, or visualization. Establishes text-based diagrams as the default documentation standard with full style guides (markdown + mermaid), 24 diagram type references, and 9 document templates.Votes: 0GitHub stars: 2,984
- MatplotlibLow-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots use seaborn; for interactive plots use plotly; for publication-ready multi-panel figures with journal styling, use scientific-visualization.Votes: 0GitHub stars: 2,984
- Mcpmed Bioinformatics ServerModel Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.Votes: 0GitHub stars: 2,984
- Medea Therapeutic DiscoveryAn AI agent for therapeutic discovery that executes transparent, multi-step omics analyses including research planning, code execution, and literature reasoning.Votes: 0GitHub stars: 2,984
- Medical Entity ExtractorExtract medical entities (symptoms, medications, lab values, diagnoses) from patient messages.Votes: 0GitHub stars: 2,984
- Medical Imaging ReviewWrite comprehensive literature reviews for medical imaging AI research. Use when writing survey papers, systematic reviews, or literature analyses on topics like segmentation, detection, classification in CT, MRI, X-ray, ultrasound, or pathology imaging. Triggers on requests for "review paper", "survey", "literature review", "综述", "systematic review", or mentions of writing academic reviews on deep learning for medical imaging.Votes: 0GitHub stars: 2,984
- Medical Research ToolkitQuery 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research. Access ChEMBL, PubMed, ClinicalTrials.gov, OpenTargets, OpenFDA, OMIM, Reactome, KEGG, UniProt, and more through a unified MCP endpoint. Use when researching disease targets, finding approved/investigational drugs, searching clinical evidence, discovering genetic associations, or analyzing compound bioactivity data.Votes: 0GitHub stars: 2,984
- Medical Specialty BriefsGenerate daily or on-demand medical research briefs for any medical specialty. Searches latest research from top-tier journals, delivers concise summaries with 1-sentence takeaways, images when available, and direct links. Use when user asks for medical news, research updates, journal briefs, or specialty-specific medical updates for specialties like endocrinology, cardiology, oncology, neurology, etc.Votes: 0GitHub stars: 2,984
- Medrxiv SearchSearch medRxiv medical preprints with natural language queries. Powered by Valyu semantic search.Votes: 0GitHub stars: 2,984
- Mesh GenerationPlan and evaluate mesh generation for numerical simulations. Use when choosing grid resolution, checking aspect ratios/skewness, estimating mesh quality constraints, or planning adaptive mesh refinement for PDE discretization.Votes: 0GitHub stars: 2,984
- Microbiome Cancer Agent--> --- name: 'microbiome-cancer-agent' description: 'AI-powered analysis of microbiome-cancer interactions including tumor microbiome profiling, immunotherapy response prediction, and microbiome-targeted therapeutic opportunities.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Microbiome-Cancer Interaction Agent** analyzes relationships between the microbiome and cancer, including tumor-as...Votes: 0GitHub stars: 2,984
- Modern Drug Rehab ComputerComprehensive knowledge system for addiction recovery environments, supporting both residential and outpatient (IOP/PHP) patients. Expert in evidence-based treatment modalities (CBT, DBT, MI,Votes: 0GitHub stars: 2,984
- Molecular DynamicsRun and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, run energy minimization and production MD, analyze trajectories (RMSD, RMSF, contact maps, free energy surfaces). For structural biology, drug binding, and biophysics.Votes: 0GitHub stars: 2,984
- Molecular Glue Discovery Agent--> --- name: 'molecular-glue-discovery-agent' description: 'AI-powered molecular glue discovery for targeted protein degradation, enabling neo-substrate recruitment and undruggable target degradation through E3 ligase interface modulation.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Molecular Glue Discovery Agent** enables AI-driven discovery of molecular glue degraders that induce prot...Votes: 0GitHub stars: 2,984
- Molecule Evolution Agent--> --- name: 'molecule-evolution-agent' description: 'Evolve Molecules' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Molecule Evolution Agent** acts as an autonomous medicinal chemist. It takes a starting molecule (or uses a default like Aspirin) and iteratively modifies its structure to optimize binding for a specific protein target.Votes: 0GitHub stars: 2,984
- Monarch DatabaseQuery the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species. Integrates OMIM, ORPHANET, HPO, ClinVar, and model organism databases. Use for rare disease gene discovery, phenotype-to-gene mapping, cross-species disease modeling, and HPO term lookup.Votes: 0GitHub stars: 2,984
- Mpn Progression Monitor Agent--> --- name: 'mpn-progression-monitor-agent' description: 'AI-powered myeloproliferative neoplasm monitoring for disease progression prediction, treatment response tracking, and transformation risk assessment in PV, ET, and myelofibrosis.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **MPN Progression Monitor Agent** provides comprehensive monitoring of myeloproliferative neoplasms (PV, ET,...Votes: 0GitHub stars: 2,984