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Claude Skills by FreedomIntelligence
github.com/FreedomIntelligence741 skills2 installs1,922 views
- Mpn Research Assistant--> --- name: mpn-research-assistant description: "Myeloproliferative neoplasm (MPN) research expertise including JAK2/CALR/MPL mutations, myelofibrosis, polycythemia vera, essential thrombocythemia. Use for MPN literature search, driver mutation analysis, PPM1D pathway analysis, fibrosis markers, megakaryocyte biology, clinical trial data interpretation, and translational research." license: Proprietary ---Votes: 0GitHub stars: 2,984
- Mrd Edge Detection Agent--> --- name: 'mrd-edge-detection-agent' description: 'Ultra-sensitive AI-powered molecular residual disease detection using MRD-EDGE deep learning for sub-0.001% VAF ctDNA detection and early relapse prediction.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **MRD-EDGE Detection Agent** implements the MRD-EDGE (Enhanced Detection of ctDNA through Genomic Error suppression) deep learning algo...Votes: 0GitHub stars: 2,984
- Multi Ancestry Prs Agent--> --- name: 'multi-ancestry-prs-agent' description: 'AI-powered multi-ancestry polygenic risk score calculation and optimization for equitable disease risk prediction across diverse global populations.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Multi-Ancestry PRS Agent** provides AI-optimized polygenic risk score calculation designed to work across diverse ancestral populations. It ad...Votes: 0GitHub stars: 2,984
- Multimodal Medical Imaging--> --- name: 'multimodal-medical-imaging' description: 'Analyzes medical images (X-ray, MRI, CT) using multimodal LLMs to identify anomalies and generate reports.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Multimodal Medical Imaging Analysis Skill** leverages state-of-the-art Vision-Language Models (VLMs) like Gemini 1.5 Pro and GPT-4o to interpret medical imagery alongside clinical text.Votes: 0GitHub stars: 2,984
- Multimodal Radpath Fusion Agent--> --- name: 'multimodal-radpath-fusion-agent' description: 'AI-powered multimodal diagnostic fusion integrating radiology imaging (CT/MRI/PET), digital pathology (WSI), genomics, and clinical data for comprehensive cancer diagnosis and treatment planning.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Multimodal Radpath Fusion Agent** integrates diverse clinical data sources including rad...Votes: 0GitHub stars: 2,984
- Myeloma Mrd Agent--> --- name: 'myeloma-mrd-agent' description: 'AI-powered minimal residual disease (MRD) analysis for multiple myeloma using next-generation flow cytometry, NGS, and mass spectrometry approaches.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Myeloma MRD Agent** provides comprehensive AI-driven minimal residual disease assessment for multiple myeloma. It integrates next-generation flow cyt...Votes: 0GitHub stars: 2,984
- NetworkxComprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.Votes: 0GitHub stars: 2,984
- Ngs Analysis--> --- name: ngs-analysis description: "Next-generation sequencing data analysis pipelines including bulk RNA-seq, scRNA-seq preprocessing, variant calling, and quality control. Use when working with FASTQ files, alignment (STAR, BWA), quantification (featureCounts, Salmon), DESeq2/edgeR analysis, or building NGS pipelines. Supports GEO/SRA data retrieval." license: Proprietary ---Votes: 0GitHub stars: 2,984
- Nicheformer Spatial Agent--> --- name: 'nicheformer-spatial-agent' description: 'Foundation model-powered spatial transcriptomics analysis leveraging 53M+ spatially resolved cells for cellular architecture modeling and tissue niche discovery.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Nicheformer Spatial Agent** leverages the Nicheformer foundation model, trained on over 53 million spatially resolved cells, to ...Votes: 0GitHub stars: 2,984
- Nk Cell Therapy Agent--> --- name: 'nk-cell-therapy-agent' description: 'AI-powered NK cell therapy design for cancer immunotherapy including CAR-NK engineering, memory-like NK generation, and KIR/HLA matching optimization.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **NK Cell Therapy Agent** provides AI-driven design and optimization of natural killer cell therapies for cancer treatment. It covers CAR-NK engi...Votes: 0GitHub stars: 2,984
- Nonlinear SolversSelect and configure nonlinear solvers for f(x)=0 or min F(x). Use for Newton methods, quasi-Newton (BFGS, L-BFGS), Broyden, Anderson acceleration, diagnosing convergence issues, choosing line search vs trust region, and analyzing Jacobian quality.Votes: 0GitHub stars: 2,984
- Numerical IntegrationSelect and configure time integration methods for ODE/PDE simulations. Use when choosing explicit/implicit schemes, setting error tolerances, adapting time steps, diagnosing integration accuracy, planning IMEX splitting, or handling stiff/non-stiff coupled systems.Votes: 0GitHub stars: 2,984
- Numerical StabilityAnalyze and enforce numerical stability for time-dependent PDE simulations. Use when selecting time steps, choosing explicit/implicit schemes, diagnosing numerical blow-up, checking CFL/Fourier criteria, von Neumann analysis, matrix conditioning, or detecting stiffness in advection/diffusion/reaction problems.Votes: 0GitHub stars: 2,984
- Ontology ExplorerParse, navigate, and query materials science ontology structure (classes, properties, hierarchy). Use when exploring an ontology like CMSO, understanding class relationships, finding properties for a given class, or searching for ontology terms related to a materials science concept. Supports OWL/XML format from the OCDO ecosystem (CMSO, ASMO, CDCO, PODO, PLDO, LDO).Votes: 0GitHub stars: 2,984
- Ontology MapperMap materials science terms, crystal structures, and sample descriptions to ontology classes and properties. Supports any ontology registered in ontology_registry.json. Use when translating natural-language material descriptions to ontology terms, annotating simulation inputs with ontology metadata, or mapping crystal parameters (space group, Bravais lattice, lattice constants) to standardized ontology representations.Votes: 0GitHub stars: 2,984
- Ontology ValidatorValidate material sample annotations and data structures against ontology constraints. Use when checking if CMSO annotations are correct, verifying that required properties are present, or validating that object property relationships have consistent domain and range. Catches unknown classes, unknown properties, domain mismatches, and missing required fields.Votes: 0GitHub stars: 2,984
- Open NotebookSelf-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when organizing research materials into notebooks, ingesting diverse content sources (PDFs, videos, audio, web pages, Office documents), generating AI-powered notes and summaries, creating multi-speaker podcasts from research, chatting with documents using context-aware AI, searching across materials with full-text and vector search, or running custom content transformations. Supports ...Votes: 0GitHub stars: 2,984
- Open Targets SearchSearch Open Targets drug-disease associations with natural language queries. Target validation powered by Valyu semantic search.Votes: 0GitHub stars: 2,984
- Opentrons Protocol Agent--> --- name: 'opentrons-protocol-agent' description: 'Generates executable Python protocols for Opentrons OT-2 and Flex robots from natural language descriptions.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Opentrons Protocol Agent** bridges the gap between experimental design and physical execution by translating instructions into Opentrons Python API scripts.Votes: 0GitHub stars: 2,984
- Organoid Drug Response Agent--> --- name: 'organoid-drug-response-agent' description: 'AI-powered analysis of patient-derived organoid (PDO) drug screening for personalized oncology treatment selection and biomarker discovery.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Organoid Drug Response Agent** provides AI-driven analysis of patient-derived organoid (PDO) drug screening data for personalized treatment selecti...Votes: 0GitHub stars: 2,984
- Pan Cancer Multiomics Agent--> --- name: 'pan-cancer-multiomics-agent' description: 'AI-powered pan-cancer analysis integrating genomic, transcriptomic, proteomic, and epigenomic data for cancer subtyping, driver identification, and cross-cancer pattern discovery.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Pan-Cancer Multi-Omics Agent** integrates multi-omics data across cancer types to identify shared oncogenic ...Votes: 0GitHub stars: 2,984
- Paper 2 WebThis skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.Votes: 0GitHub stars: 2,984
- Parameter OptimizationExplore and optimize simulation parameters via design of experiments (DOE), sensitivity analysis, and optimizer selection. Use for calibration, uncertainty studies, parameter sweeps, LHS sampling, Sobol analysis, surrogate modeling, or Bayesian optimization setup.Votes: 0GitHub stars: 2,984
- Patents SearchSearch global patents with natural language queries. Prior art, patent landscapes, and innovation tracking via Valyu.Votes: 0GitHub stars: 2,984
- Patiently AiPatiently AI simplifies medical documents for patients. Takes doctor's letters, test results, prescriptions, discharge summaries, and clinical notes and explains them in clear, personalised language. Built by PharmaTools.AI.Votes: 0GitHub stars: 2,984
- Pdf Processing ProProduction-ready PDF processing with forms, tables, OCR, validation, and batch operations. Use when working with complex PDF workflows in production environments, processing large volumes of PDFs, or requiring robust error handling and validation.Votes: 0GitHub stars: 2,984
- Pdf ProcessingExtract text and tables from PDF files, fill forms, merge documents. Use when working with PDF files or when the user mentions PDFs, forms, or document extraction.Votes: 0GitHub stars: 2,984
- Pdx Model Analysis Agent--> --- name: 'pdx-model-analysis-agent' description: 'AI-powered analysis of patient-derived xenograft (PDX) models for drug response prediction, translational research, and personalized treatment selection.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **PDX Model Analysis Agent** provides AI-driven analysis of patient-derived xenograft models for preclinical drug testing, translational re...Votes: 0GitHub stars: 2,984
- Performance ProfilingIdentify computational bottlenecks, analyze scaling behavior, estimate memory requirements, and receive optimization recommendations for any computational simulation. Use when simulations are slow, investigating parallel efficiency, planning resource allocation, or seeking performance improvements through timing analysis, scaling studies, memory profiling, or bottleneck detection.Votes: 0GitHub stars: 2,984
- Pharmacogenomics Agent--> --- name: 'pharmacogenomics-agent' description: 'AI-driven pharmacogenomic analysis for precision dosing and adverse event prediction using multi-omics data.' keywords: - pharmacogenomics - precision-dosing - cpic-guidelines - adverse-events - multi-omics measurable_outcome: 'Provides validated dosing recommendations for >50 drugs with 99% concordance to CPIC guidelines.' allowed-tools: - read_file - run_shell_command --- The **Pharmacogenomics Agent** integrates AI and multi-omics data t...Votes: 0GitHub stars: 2,984
- Pharmgx ReporterPharmacogenomic report from DTC genetic data (23andMe/AncestryDNA) — 12 genes, 31 SNPs, 51 drugsVotes: 0GitHub stars: 2,984
- PhylogeneticsBuild and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.Votes: 0GitHub stars: 2,984
- PlotlyInteractive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashboards, exploratory analysis, and presentations. For static publication figures use matplotlib or scientific-visualization.Votes: 0GitHub stars: 2,984
- Popeve Variant Predictor Agent--> --- name: 'popeve-variant-predictor-agent' description: 'AI-powered genetic variant pathogenicity prediction using PopEVE deep learning model for population-aware disease variant identification and rare disease diagnosis.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **PopEVE Variant Predictor Agent** leverages the PopEVE deep learning model from Harvard Medical School to predict pathoge...Votes: 0GitHub stars: 2,984
- Post ProcessingExtract, analyze, and visualize simulation output data. Use for field extraction, time series analysis, line profiles, statistical summaries, derived quantity computation, result comparison to references, and automated report generation from simulation results.Votes: 0GitHub stars: 2,984
- Precision Oncology Agent--> --- name: precision-oncology-agent description: Fuse genomic variants, pathology findings, and clinical context to draft evidence-linked therapy options for tumor board review. allowed-tools: - read_file - run_shell_command ---Votes: 0GitHub stars: 2,984
- Prior Auth Coworker--> --- name: 'prior-auth-coworker' description: 'Prior Auth Review' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill acts as an automated utilization management reviewer. It takes unstructured clinical notes and a procedure code, compares them against internal policy criteria (e.g., conservative therapy failure), and renders a decision.Votes: 0GitHub stars: 2,984
- Prior Auth Review SkillAutomate payer review of prior authorization (PA) requests. This skill should be used when users say "Review this PA request", "Process prior authorization for [procedure]", "Assess medical necessity", "Generate PA decision", or when processing clinical documentation for coverage policy validation and authorization decisions.Votes: 0GitHub stars: 2,984
- Profile ReportUnified personal genomic profile report — reads a PatientProfile JSON and synthesizes all skill results into a single "Your Genomic Profile" document.Votes: 0GitHub stars: 2,984
- Protac Design Agent--> --- name: 'protac-design-agent' description: 'AI-powered PROTAC (Proteolysis Targeting Chimera) design for targeted protein degradation, integrating ternary complex prediction, linker optimization, and ADMET modeling.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **PROTAC Design Agent** provides AI-assisted design of Proteolysis Targeting Chimeras (PROTACs) for targeted protein degradati...Votes: 0GitHub stars: 2,984
- Protein Structure Prediction--> --- name: 'protein-structure-prediction' description: 'Predicts 3D protein structures from amino acid sequences using ESMFold or AlphaFold3 (mock).' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Protein Structure Prediction Skill** provides an interface to state-of-the-art folding models. It takes an amino acid sequence and returns a PDB file or structure metrics (pLDDT).Votes: 0GitHub stars: 2,984
- Prs Net Deep Learning Agent--> --- name: 'prs-net-deep-learning-agent' description: 'Geometric deep learning-based polygenic risk score prediction using PRS-Net for modeling gene interactions, enhanced disease prediction, and cross-ancestry portability.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **PRS-Net Deep Learning Agent** implements interpretable geometric deep learning for polygenic risk score prediction. PRS...Votes: 0GitHub stars: 2,984
- Psychologist AnalystAnalyzes events through psychological lens using cognitive psychology, social psychology, developmental psychology, clinical psychology, and neuroscience. Provides insights on behavior, cognition, emotion, motivation, group dynamics, decision-making biases, mental health, and individual differences. Use when: Behavioral patterns, decision-making, group behavior, mental health, leadership, persuasion, trauma, development. Evaluates: Cognitive processes, emotional responses, motivations, biases...Votes: 0GitHub stars: 2,984
- Pubmed SearchSearch PubMed for scientific literature. Use when the user asks to find papers, search literature, look up research, find publications, or asks about recent studies. Triggers on "pubmed", "papers", "literature", "publications", "research on", "studies about".Votes: 0GitHub stars: 2,984
- Pytorch LightningDeep learning framework (PyTorch Lightning). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard), distributed training (DDP, FSDP, DeepSpeed), for scalable neural network training.Votes: 0GitHub stars: 2,984
- Radgpt Radiology Reporter--> --- name: radgpt-radiology-reporter description: Radiology Reporter keywords: - radiology - report-generation - patient-friendly - summarization - explanation measurable_outcome: Generate a patient-friendly explanation of a radiology report with <1% hallucination rate within 30 seconds. license: MIT metadata: author: Stanford Medicine version: "1.0.0" compatibility: - system: Python 3.9+ allowed-tools: - run_shell_command - read_file --- An LLM-based agent designed to summarize and explai...Votes: 0GitHub stars: 2,984
- Radiomics Pathomics Fusion Agent--> --- name: 'radiomics-pathomics-fusion-agent' description: 'AI-powered multimodal fusion of radiology (CT/MRI/PET) and pathology (H&E/IHC) imaging with clinical and genomic data for comprehensive cancer diagnostics and treatment prediction.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Radiomics Pathomics Fusion Agent** integrates multimodal medical imaging data from radiology (CT, MRI,...Votes: 0GitHub stars: 2,984
- Recovery Community ModeratorTrauma-informed AI moderator for addiction recovery communities. Applies harm reduction principles, honors 12-step traditions, distinguishes healthy conflict from abuse, detects crisis posts.Votes: 0GitHub stars: 2,984
- Regulatory Drafter--> --- name: 'regulatory-drafter' description: 'Automates the drafting of regulatory documents (e.g., FDA CTD sections) with citation management and audit trails.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill assists regulatory affairs professionals by automatically generating sections of the Common Technical Document (CTD) from raw data and literature. It focuses on accuracy, tracea...Votes: 0GitHub stars: 2,984
- Regulatory Drafting--> --- name: 'regulatory-drafting' description: 'Regulatory Drafting agent for healthcare workflows.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill implements the Regulatory Drafting workflow using Anthropic's Claude.Votes: 0GitHub stars: 2,984