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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab7,765 skills0 installs8,278 views
- Unit Test Development For Spectral LoadersUse when when you have implemented parser functions for one or more massVotes: 0GitHub stars: 15
- Unit Test Fixture Design And ExecutionUse when when implementing or modifying a numerical compression/decompressionVotes: 0GitHub stars: 15
- Unit Test Validation For PreprocessingUse when after implementing or modifying basic peak filtering operationsVotes: 0GitHub stars: 15
- Unit Test ValidationUse when when you need to confirm that a research tool or package maintainsVotes: 0GitHub stars: 15
- Unit Testing Conditional BranchesUse when when implementing or refactoring a FileInterface._open methodVotes: 0GitHub stars: 15
- Univariate Statistical Analysis InterpretationUse when you have a preprocessed feature table from non-targeted LC-MS/MSVotes: 0GitHub stars: 15
- Univariate Statistical Output InterpretationUse when after running omu_summary (t-test) or omu_anova (ANOVA) on metabolomicsVotes: 0GitHub stars: 15
- Univariate Statistical Testing For MetabolomicsUse when you have paired metabolomics count data (metabolite abundanceVotes: 0GitHub stars: 15
- Unknown Chemical Extraction From SpectraUse when when you have an existing real mzML file from a metabolomicsVotes: 0GitHub stars: 15
- Unknown Chemical Identification In Complex MixturesUse when you have experimental LC–QTOF mass spectra from complex environmentalVotes: 0GitHub stars: 15
- Unknown Pollutant Identification Mass SpectrometryUse when you have UPLC-HRMS raw data (ThermoFisher, Agilent, or compatibleVotes: 0GitHub stars: 15
- Unknown Sample Reference ComparisonUse when you have a preprocessed unknown sample spectrum (m/z peaks andVotes: 0GitHub stars: 15
- Unmatched Peak Detection And PenalizationUse when when annotating MS/MS spectra against spectral libraries andVotes: 0GitHub stars: 15
- Unsaturation Degree QuantificationUse when you have FT-ICR MS peak data with assigned molecular formulasVotes: 0GitHub stars: 15
- Unsupervised Clustering In High Dimensional SpaceUse when you have a preprocessed feature matrix from metabolomics dataVotes: 0GitHub stars: 15
- Unsupervised Pattern Discovery SpectraUse when when you have preprocessed mass spectral data (normalized peakVotes: 0GitHub stars: 15
- Unsupervised Spectrum ClusteringUse when when you have high-dimensional embedding vectors from pretrainedVotes: 0GitHub stars: 15
- Untargeted Lc Ms Data PreprocessingUse when when you have raw untargeted LC-MS metabolomics data and needVotes: 0GitHub stars: 15
- Untargeted Lcms Peak AnnotationUse when you have a peak-intensity matrix from untargeted LC-MS analysisVotes: 0GitHub stars: 15
- Untargeted Metabolomics AnnotationUse when you have authentic metabolite standards analyzed by LC-MS inVotes: 0GitHub stars: 15
- Untargeted Metabolomics Data ProcessingUse when you have untargeted MS2 spectral data (from LC-MS/MS or similarVotes: 0GitHub stars: 15
- Untargeted Metabolomics Data Quality AssessmentUse when after imputation and signal drift correction (OUKS steps 3–4),Votes: 0GitHub stars: 15
- Untargeted Metabolomics Dataset IntegrationUse when you have two LC-MS feature tables (each with m/z, retentionVotes: 0GitHub stars: 15
- Untargeted Metabolomics Feature AnalysisUse when you have a feature table from untargeted metabolomics (withVotes: 0GitHub stars: 15
- Untargeted Metabolomics Feature InterpretationUse when you have an untargeted metabolomics feature table (m/z values,Votes: 0GitHub stars: 15
- Untargeted Metabolomics Marker IdentificationUse when when you have untargeted GC–MS or LC–MS data in the form ofVotes: 0GitHub stars: 15
- Untargeted Metabolomics Workflow ImplementationUse when you have LC-MS/MS data acquired in DDA mode from untargetedVotes: 0GitHub stars: 15
- Unwanted Variation RemovalUse when metabolomics featuredata exhibits unwanted variation from batchVotes: 0GitHub stars: 15
- Upset Plot GenerationUse when after loading and filtering search results from two or moreVotes: 0GitHub stars: 15
- Url Format Constraint CheckingUse when ingesting or validating project JSON documents against a schemaVotes: 0GitHub stars: 15
- Url Validation And Accessibility VerificationUse when when compiling or maintaining a catalog of web-accessible scientificVotes: 0GitHub stars: 15
- User Interface IntegrationUse when when you have a multi-step computational workflow (e.g., peakVotes: 0GitHub stars: 15
- User Override Parameter ManagementUse when punc'data's automatic keyword-based column recognition producesVotes: 0GitHub stars: 15
- Usi Namespace ParsingUse when when you need to retrieve mass spectrometry spectrum data fromVotes: 0GitHub stars: 15
- Usi Spectrum Identifier EncodingUse when you have a Universal Spectrum Identifier (USI) string referencingVotes: 0GitHub stars: 15
- Usi Spectrum Identifier ParsingUse when when you have a USI string (e.g., mzspec:MTBLS1124:QC07.Votes: 0GitHub stars: 15
- Usi Spectrum Retrieval And LoadingUse when you have a USI accession (e.g., 'mzspec:MSV000082283:f07074:scan:5475'Votes: 0GitHub stars: 15
- Usi String Parsing And ResolutionUse when you have a USI string referencing a spectrum in an online publicVotes: 0GitHub stars: 15
- Usi String ParsingUse when when you have a USI string (e.g., mzspec:GNPS:TASK-d93bdbb5cdda40e48975e6e18a45c3ce-f.mwang87/data/Yao_Streptomyces/roseosporus/0518_s_BuOH.Votes: 0GitHub stars: 15
- Validated Dataset Integrity VerificationUse when you have received a validated dataset (e.g., interim/tables/4_analysed/platinum.tsv.Votes: 0GitHub stars: 15
- Validated Link Enrichment AnalysisUse when when you have a ranked list of GCF-MF (genomic cluster family–molecularVotes: 0GitHub stars: 15
- Validated Link Proportional ComparisonUse when when you have scored GCF-MF (gene cluster family–molecular family)Votes: 0GitHub stars: 15
- Validated Link Ranking ComparisonUse when when you have computed multiple independent scoring functionsVotes: 0GitHub stars: 15
- Validation Error CategorizationUse when when a parsed mwTab file (MS or NMR experimental data) mustVotes: 0GitHub stars: 15
- Validation Report GenerationUse when when you have loaded a project JSON document from the PairingVotes: 0GitHub stars: 15
- Validation Test Design For Biochemical IdentifiersUse when you have implemented or integrated a biochemical identifierVotes: 0GitHub stars: 15
- Validator Tool IntegrationUse when you have a repository of structured records (e.g., mass spectrometryVotes: 0GitHub stars: 15
- Validity Constraint Enforcement For MsdataUse when when designing a custom MsBackend subclass (e.g., MsBackendTest)Votes: 0GitHub stars: 15
- Variable Importance Ranking And InterpretationUse when after fitting a random forest classifier to metabolomics countVotes: 0GitHub stars: 15
- Variance Estimation Within And Between GroupsUse when you have a QC-annotated LC-MS feature intensity table (CSV orVotes: 0GitHub stars: 15