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Claude Skills by SpectrAI-Initiative
github.com/SpectrAI-Initiative221 skills4 installs303 views
- Drug Metabolism StudyDrug Metabolism Study - Study drug metabolism: FDA metabolism data, ChEMBL metabolism records, PubChem compound data, and clinical pharmacology. Use this skill for drug metabolism tasks involving get metabolism by id get pharmacokinetics by drug name get compound by name get clinical pharmacology by drug name. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Drug Repurposing ScreenDrug Repurposing Screening - Screen existing drugs for new indications by querying FDA indications, ChEMBL mechanisms, and OpenTargets drug-disease associations. Use this skill for drug discovery tasks involving get indications by drug name get mechanism of action by drug name get drug by name get associated drugs by target name. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Drug Safety ProfileComprehensive Drug Safety Profile - Build a complete drug safety profile by combining FDA adverse reactions, boxed warnings, drug interactions, and contraindications. Use this skill for pharmacology tasks involving get adverse reactions by drug name get boxed warning info by drug name get drug interactions by drug name get contraindications by drug name. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Drug Target IdentificationDrug Target Identification Pipeline - Identify drug targets for a disease by querying OpenTargets for associated targets, then retrieve detailed target info from ChEMBL and protein data from UniProt. Use this skill for drug discovery tasks involving get associated targets by disease efoId get target by name get general info by protein or gene name. Combines 3 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Drug Target StructureDrug-Target Structural Biology - Integrate drug and target structure: get drug from ChEMBL, target structure from PDB, dock them, and predict ADMET. Use this skill for structural pharmacology tasks involving get drug by name retrieve protein data by pdbcode quick molecule docking pred molecule admet. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Drug Warning ReportDrug Warning Intelligence Report - Generate drug warning report: ChEMBL drug warnings, FDA boxed warnings, adverse reactions, and environmental warnings. Use this skill for pharmacovigilance tasks involving get drug warning by id get boxed warning info by drug name get adverse reactions by drug name get environmental warning by drug name. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Drugsda AdmetPredict the ADMET (absorption, distribution, metabolism, excretion, and toxicity) properties of the input molecules.Votes: 0GitHub stars: 390
- Drugsda Compound RetrieveRetrieve SMILES strings from PubChem using compound names.Votes: 0GitHub stars: 390
- Drugsda Data ValidCheck if the input protein sequence or molecule SMILES string is valid.Votes: 0GitHub stars: 390
- Drugsda Denovo SamplingGenerate new molecules de novo.Votes: 0GitHub stars: 390
- Drugsda DlepsCalculate disease reversal scores for the provided molecules relative to a specific disease.Votes: 0GitHub stars: 390
- Drugsda Drug LikenessCompute the drug-likeness metrics (QED score and Number of violations of Lipinski's Rule of Five) of the input candidate molecules (SMILES format).Votes: 0GitHub stars: 390
- Drugsda EsmfoldUse ESMFold model to predict 3D structure of the input protein sequence.Votes: 0GitHub stars: 390
- Drugsda File TransferImplement data transmission between the local computer and the MCP Server using Base64 encodingVotes: 0GitHub stars: 390
- Drugsda Linker SamplingGenerate new molecules sampling from the input two warhead fragments.Votes: 0GitHub stars: 390
- Drugsda Mol PropertiesCalculate different types of molecular properties based on SMILES strings, covering basic physicochemical properties, hydrophobicity, hydrogen bonding capability, molecular complexity, topological structures, charge distribution, and custom complexity metrics, respectively.Votes: 0GitHub stars: 390
- Drugsda Mol SimilarityCompute the Tanimoto similarities between a target molecule and a list of candidate molecules using Morgan fingerprints.Votes: 0GitHub stars: 390
- Drugsda Mol2mol SamplingGenerate new molecules sampling from the input molecule.Votes: 0GitHub stars: 390
- Drugsda P2rank```python import json from contextlib import AsyncExitStack from mcp.client.streamable_http import streamablehttp_client from mcp import ClientSessionVotes: 0GitHub stars: 390
- Drugsda Peptide SamplingGenerate new peptide molecules sampling from the input peptide sequence.Votes: 0GitHub stars: 390
- Drugsda ProsstGiven a protein sequence and its structure, employ ProSST model to predict mutation effects and obtain the top-k mutated sequences.Votes: 0GitHub stars: 390
- Drugsda Rgroup SamplingGenerate new molecules sampling from the input scaffold.Votes: 0GitHub stars: 390
- Drugsda Target RetrieveSearch the protein information from the input gene name and downloads the optimal PDB or AlphaFold structures.Votes: 0GitHub stars: 390
- Electrical Circuit AnalysisElectrical Circuit Analysis - Analyze electrical circuit: compute capacitance, convert resistance units, calculate total charge, and duty cycle. Use this skill for electrical engineering tasks involving convert resistance kOhm to Ohm calculate geometric term calculate absolute error. Combines 3 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Electromagnetic AnalysisElectromagnetic Field Analysis - Analyze EM fields: vacuum permittivity, total charge, radiation pressure, and photon calculations. Use this skill for electromagnetics tasks involving calculate vacuum permittivity calculate total charge calculate radiation pressure calculate total power. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Energy ConversionEnergy Unit Conversion Pipeline - Convert between energy units and analyze: MeV to Joules, scientific notation, and error calculation. Use this skill for physics tasks involving convert energy MeV to J convert to scientific notation format scientific notation calculate absolute error. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Ensembl Sequence RetrievalRetrieve genomic sequences from Ensembl database using transcript or gene IDs to obtain nucleotide and protein sequences.Votes: 0GitHub stars: 390
- Enzyme EngineeringEnzyme Active Site Engineering - Engineer enzyme: identify active site residues, predict pocket, analyze binding site, and predict mutations. Use this skill for enzymology tasks involving predict functional residue run fpocket get binding site by id pred mutant sequence. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Enzyme Inhibitor DesignEnzyme Inhibitor Design - Design enzyme inhibitor: target structure, pocket prediction, compound screening, and ADMET assessment. Use this skill for enzyme pharmacology tasks involving retrieve protein data by pdbcode pred pocket prank quick molecule docking pred molecule admet calculate mol drug chemistry. Combines 5 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Epigenetics DrugEpigenetics & Drug Response - Link epigenetics to drug response: gene regulation, variant effects, drug interactions, and expression. Use this skill for epigenetic pharmacology tasks involving get overlap region get vep hgvs get drug interactions by drug name get gene expression across cancers. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Epigenomic LandscapeEpigenomic Landscape Mapping - Map epigenomic landscape: overlapping features, regulatory elements, binding matrices, and phenotype links. Use this skill for epigenomics tasks involving get overlap region get phenotype region get species binding matrix get track data. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Experimental Data ProcessingExperimental Data Processing - Process experimental data: absolute error, mean square, max value, scientific notation formatting. Use this skill for experimental physics tasks involving calculate absolute error calculate mean square calculate max value format scientific notation convert to scientific notation. Combines 5 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Fda Drug Risk AssessmentAssess drug risks and adverse effects using FDA drug database to retrieve safety information and risk profiles.Votes: 0GitHub stars: 390
- Full Protein AnalysisFull Protein Characterization - Complete protein characterization: validate sequence, compute all properties, predict structure, and analyze pockets. Use this skill for protein biochemistry tasks involving is valid protein sequence analyze protein ComputeProtPara pred protein structure esmfold run fpocket. Combines 5 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Functional Group ProfilingFunctional Group Profiling - Profile functional groups: radical assignment, H-bond analysis, aromaticity, and abbreviation condensation. Use this skill for organic chemistry tasks involving AssignRadicals GetHBANum AromaticityAnalyzer CondenseAbbreviationSubstanceGroups. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Gene Knowledge IntegrationGiven a gene symbol (e.g. TPMT), query 3 public databases (ClinGen CAR, PharmGKB, Monarch) to obtain gene registry info, FDA drug labels, clinical annotations, and gene-phenotype associations. Save all results into a JSON file.Votes: 0GitHub stars: 390
- Gene Comprehensive LookupGene Comprehensive Lookup - Comprehensive gene lookup: NCBI gene data, Ensembl gene info, UniProt protein data, and KEGG pathway links. Use this skill for bioinformatics tasks involving get gene metadata by gene name get lookup symbol get general info by protein or gene name kegg find. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Gene Disease AssociationGene-Disease Association Analysis - Analyze gene-disease associations: NCBI gene metadata, OpenTargets disease associations, TCGA expression, and Monarch phenotypes. Use this skill for medical genetics tasks involving get gene metadata by gene name get associated targets by disease efoId get gene expression across cancers get joint associated diseases by HPO ID list. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Gene Expression AtlasGene Expression Atlas - Build gene expression atlas: TCGA cancer expression, NCBI gene info, Ensembl gene details, and literature search. Use this skill for transcriptomics tasks involving get gene expression across cancers get gene metadata by gene name get lookup symbol search literature. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Gene Family EvolutionGene Family Evolution Analysis - Analyze gene family evolution: CAFE gene tree, homology, Ensembl gene tree, and taxonomy. Use this skill for molecular evolution tasks involving get cafe genetree member symbol get homology symbol get genetree member symbol get taxonomy classification. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Gene Therapy TargetGene Therapy Target Analysis - Analyze gene therapy target: gene info, variant pathogenicity, protein structure, and clinical evidence. Use this skill for gene therapy tasks involving get gene metadata by gene name get vep hgvs Protein structure prediction ESMFold clinvar search. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Gene To Drug PipelineGene-to-Drug Discovery Pipeline - Full gene-to-drug pipeline: gene lookup, protein structure, binding pocket, virtual screening, and drug-likeness. Use this skill for translational medicine tasks involving get gene metadata by gene name pred protein structure esmfold run fpocket boltz binding affinity calculate mol drug chemistry. Combines 5 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Gene Variant Drug NexusGene-Variant-Drug Nexus - Connect gene variants to drugs: variant effect, gene-disease link, drug associations, and clinical evidence. Use this skill for translational genomics tasks involving get vep hgvs get associated targets by disease efoId get associated drugs by target name clinvar search. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Genetic Counseling ReportGenetic Counseling Variant Report - Generate variant report for genetic counseling: VEP, ClinVar, gene phenotype, and literature evidence. Use this skill for clinical genetics tasks involving get vep hgvs clinvar search get phenotype gene pubmed search. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Genome AnnotationGenome Annotation Pipeline - Annotate a genome: NCBI annotation report, Ensembl gene lookup, UCSC tracks, and KEGG pathway links. Use this skill for genomics tasks involving get genome annotation report get lookup symbol list tracks kegg link. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Geometric Volume CalculationCalculate volumes of geometric shapes for engineering design and mathematical analysis.Votes: 0GitHub stars: 390
- Geometry TrigonometryGeometry & Trigonometry Suite - Solve geometry problems: calculate area, height from sine, angle in degrees, and increase factor. Use this skill for mathematics tasks involving calculate area calculate height from length and sine calculate phi deg calculate increase factor. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Go Term AnalysisGene Ontology Analysis - Analyze GO terms: ChEMBL GO slim, STRING functional enrichment, STRING annotation, and Ensembl ontology. Use this skill for functional genomics tasks involving get go slim by id get functional enrichment get functional annotation get ontology name. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Infectious Disease AnalysisInfectious Disease Analysis - Analyze infectious disease: virus data, taxonomy, antimicrobial drugs, and resistance literature. Use this skill for infectious disease tasks involving get virus dataset report get taxonomy get mechanism of action by drug name pubmed search. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Interproscan Domain AnalysisAnalyze protein sequences using InterProScan to identify functional domains, protein families, and Gene Ontology (GO) annotations.Votes: 0GitHub stars: 390