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Claude Skills by SpectrAI-Initiative
github.com/SpectrAI-Initiative221 skills4 installs303 views
- Protein Properties CalculationCalculate comprehensive protein sequence properties including isoelectric point, molecular weight, hydrophobicity, and physicochemical parameters.Votes: 0GitHub stars: 390
- Protein Classification AnalysisProtein Classification Analysis - Classify protein: ChEMBL protein classification, UniProt entry, InterPro domains, and Ensembl biotypes. Use this skill for protein science tasks involving search protein classification get uniprotkb entry by accession query interpro get info biotypes. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Protein Complex AnalysisProtein Complex Visualization & Analysis - Analyze protein complex: download structure, visualize complex, extract chains, and calculate quality metrics. Use this skill for structural biology tasks involving retrieve protein data by pdbcode visualize complex extract pdb chains calculate pdb basic info. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Protein Database CrossrefProtein Cross-Database Reference - Cross-reference protein: UniProt entry, NCBI gene, Ensembl xrefs, and PDB structure search. Use this skill for proteomics tasks involving get uniprotkb entry by accession get gene metadata by gene name get xrefs symbol retrieve protein data by pdbcode. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Protein Drug InteractionProtein-Drug Interaction Profiling - Profile protein-drug interactions: protein properties, drug structure, binding affinity prediction, and interaction data. Use this skill for molecular pharmacology tasks involving calculate protein sequence properties ChemicalStructureAnalyzer boltz binding affinity PredictDrugTargetInteraction. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Protein EngineeringProtein Engineering Workflow - Engineer a protein: predict structure, identify functional residues, predict beneficial mutations, and calculate properties. Use this skill for protein engineering tasks involving Protein structure prediction ESMFold predict functional residue zero shot sequence prediction calculate protein sequence properties. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Protein Function AnnotationProtein Function Annotation Pipeline - Annotate protein function: UniProt metadata, InterPro domains, functional prediction, and GO enrichment. Use this skill for proteomics tasks involving query uniprot query interpro predict protein function get functional enrichment. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Protein Interaction NetworkProtein Interaction Network Analysis - Build protein interaction network: map identifiers with STRING, get PPI network, compute enrichment, and link to KEGG pathways. Use this skill for systems biology tasks involving mapping identifiers get string network interaction get ppi enrichment kegg link. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Protein Property ComparisonCross-Species Protein Comparison - Compare proteins across species: get orthologs from NCBI, compute properties for each, and compare similarity. Use this skill for comparative biology tasks involving get gene orthologs calculate protein sequence properties calculate smiles similarity get homology id. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Protein Quality AssessmentProtein Structure Quality Assessment - Assess structure quality: basic info, geometry analysis, quality metrics, composition, and visualization. Use this skill for structural biology tasks involving calculate pdb basic info calculate pdb structural geometry calculate pdb quality metrics calculate pdb composition info visualize protein. Combines 5 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Protein Similarity SearchProtein Similarity Search - Search for similar proteins: extract sequence from PDB, search structures with FoldSeek, find homologs with STRING, and check UniProt. Use this skill for bioinformatics tasks involving extract pdb sequence foldseek search get best similarity hits between species search uniprotkb entries. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Protein Solubility OptimizationProtein Solubility Optimization - Optimize protein solubility: calculate properties, predict solubility, predict hydrophilicity, and suggest mutations. Use this skill for protein engineering tasks involving calculate protein sequence properties predict protein function ComputeHydrophilicity zero shot sequence prediction. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Protein Structure AnalysisProtein Structure Comprehensive Analysis - Comprehensive structure analysis: download PDB, extract chains, calculate geometry, quality metrics, and composition. Use this skill for structural biology tasks involving retrieve protein data by pdbcode extract pdb chains calculate pdb structural geometry calculate pdb quality metrics calculate pdb composition info. Combines 5 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Proteome AnalysisProteome-Level Analysis - Analyze at proteome level: get proteome from UniProt, gene-centric view, functional annotation from STRING. Use this skill for proteomics tasks involving get proteome by id get gene centric by proteome get functional annotation. Combines 3 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Protocol Extraction From PdfExtract laboratory protocols from PDF documents using Thoth-Plan to convert experimental procedures into structured text.Votes: 0GitHub stars: 390
- Protocol GenerationGenerate detailed laboratory protocols from natural language descriptions using AI, producing step-by-step experimental procedures ready for lab execution.Votes: 0GitHub stars: 390
- Protocol To Executable JsonConvert laboratory protocols to executable JSON format using Thoth-OP for automated lab equipment control.Votes: 0GitHub stars: 390
- Pubchem Smiles SearchSearch PubChem database using SMILES strings to retrieve compound information and chemical properties.Votes: 0GitHub stars: 390
- Pubchem Deep DivePubChem Deep Dive Analysis - Deep dive into PubChem: compound info, bioassay summary, 3D conformers, synonyms, and general description. Use this skill for chemical databases tasks involving get pubchem compound by cid get assay summary by cid get conformers by cid get compound synonyms by name get general info by compound name. Combines 5 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Pubmed Article SearchSearch PubMed database for scientific articles and publications to retrieve biomedical literature.Votes: 0GitHub stars: 390
- Rare Disease GeneticsRare Disease Genetic Analysis - Analyze rare disease genetics: Monarch phenotype-disease mapping, ClinVar variants, NCBI gene data, and OpenTargets. Use this skill for rare disease genetics tasks involving get HPO ID by phenotype get joint associated diseases by HPO ID list clinvar search get associated targets by disease efoId. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Region Gene ElementsQuery IGVF Catalog for regulatory element–gene associations within a genomic region, including association scores, element types, and biosample context.Votes: 0GitHub stars: 390
- Regulatory Region AnalysisRegulatory Region Analysis - Analyze regulatory regions: get overlapping features, binding matrix, sequence, and phenotype associations. Use this skill for epigenomics tasks involving get overlap region get species binding matrix get sequence get phenotype region. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Research Ideation FullUse when the user wants the full research ideation workflow grounded in one seed paper, including complete ideation, feasibility review, experiment planning, and final synthesis, or makes an equivalent ideation request in another language.Votes: 0GitHub stars: 390
- Researcher Ambiguity GateUse when the research goal, evaluation target, scope, resources, timeline, or decision criteria are ambiguous, conflicting, or not operationally testable.Votes: 0GitHub stars: 390
- Researcher Context AuditUse when the Researcher starts, resumes, or reaches a major decision point. Build a context inventory from workstation materials, prior messages, existing artifacts, requirements, and unfinished work.Votes: 0GitHub stars: 390
- Researcher Dispatch SupervisorUse after the user confirms the plan. Dispatch the next justified worker task, supervise progress, enforce artifact-backed completion, and keep the workflow aligned with the approved plan.Votes: 0GitHub stars: 390
- Researcher Plan ArchitectUse when the Researcher must convert a confirmed scientific goal into a staged, executable research plan with role assignments, milestones, resources, checkpoints, and risk controls.Votes: 0GitHub stars: 390
- Researcher Replan RecoveryUse when the workflow hits contradictions, missing evidence, failed runs, design flaws, or resource shifts. Diagnose the failure class, choose the narrowest safe correction, and escalate to the user when the core plan changes.Votes: 0GitHub stars: 390
- Researcher Rigor GateUse before plan submission, major plan revision, and major stage transitions. Verify alignment, feasibility, rigor, completeness, and prevent unjustified regressions to earlier workflow phases.Votes: 0GitHub stars: 390
- Scientific Literature SearchSearch scientific literature and research papers using FlowSearch to find relevant academic articles and publications.Votes: 0GitHub stars: 390
- Seawater Freezing TemperatureCalculate the freezing point temperature of seawater from absolute salinity and pressure using GSW thermodynamic equations.Votes: 0GitHub stars: 390
- Seawater Sound Speed CalculationCalculate sound speed in seawater from practical salinity, temperature, and pressure using the Gibbs Seawater Oceanographic Toolbox.Votes: 0GitHub stars: 390
- Seismic Waveform ProcessingProcess seismic waveform data including reading MinISEED/SAC files, extracting metadata, and visualizing earthquake signals.Votes: 0GitHub stars: 390
- Signal ProcessingSignal Processing Analysis - Analyze signals: duty cycle, frequency range, electron wavelength, and measurement error analysis. Use this skill for signal processing tasks involving calculate duty cycle calculate frequency range electron wavelength calculate absolute error. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Skill CreatorCreate new skills, improve existing skills, and measure skill performance. Use when users want to create a skill from scratch, update or optimize an existing skill, run evals to test a skill, or benchmark skill performance with variance analysis.Votes: 0GitHub stars: 390
- Smiles To Cas ConversionConvert SMILES strings to CAS registry numbers using material informatics tools to identify chemical substances.Votes: 0GitHub stars: 390
- Smiles Comprehensive AnalysisSMILES Comprehensive Analysis - Comprehensive SMILES analysis: validate, convert name, compute all molecular descriptors, and predict ADMET. Use this skill for cheminformatics tasks involving is valid smiles ChemicalStructureAnalyzer calculate mol basic info pred molecule admet. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Snp Functional AnalysisSNP Functional Impact Analysis - Analyze SNP function: VEP prediction, variation details, phenotype association, and literature evidence. Use this skill for functional genomics tasks involving get vep id get variation get phenotype accession pubmed search. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Statistical Error AnalysisStatistical Error Analysis - Analyze measurement errors: absolute error, scientific notation, max value, mean square, and formatting. Use this skill for statistics tasks involving calculate absolute error convert to scientific notation calculate max value calculate mean square format scientific notation. Combines 5 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- String Ppi EnrichmentAnalyze protein-protein interaction enrichment using STRING database to identify functional networks and pathway associations.Votes: 0GitHub stars: 390
- Structural Homology ModelingStructural Homology & Evolution Analysis - Analyze protein evolution: get gene tree from Ensembl, find homologs, compare sequences, and predict structure. Use this skill for evolutionary biology tasks involving get homology symbol get genetree member symbol calculate protein sequence properties pred protein structure esmfold. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Structural PharmacogenomicsStructural Pharmacogenomics - Link structure to pharmacogenomics: variant effect, protein structure change, drug binding, and clinical data. Use this skill for pharmacogenomics tasks involving get vep hgvs pred protein structure esmfold boltz binding affinity get pharmacogenomics info by drug name. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Substance ToxicologySubstance Toxicology Report - Toxicology report: PubChem substance data, FDA toxicology, carcinogenicity data, and environmental warnings. Use this skill for toxicology tasks involving get substance by name get nonclinical toxicology info by drug name get carcinogenic mutagenic fertility impairment info by drug name get environmental warning by drug name. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Substructure Activity SearchSubstructure-Activity Relationship - Analyze substructure-activity: ChEMBL substructure search, activity data, PubChem compounds, and similarity. Use this skill for medicinal chemistry tasks involving get substructure by smiles search activity search pubchem by smiles calculate smiles similarity. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Synthetic Biology DesignSynthetic Biology Design - Design synthetic biology construct: gene lookup, codon optimization, protein property prediction, and structure prediction. Use this skill for synthetic biology tasks involving get sequence id DegenerateCodonCalculatorbyAminoAcid calculate protein sequence properties pred protein structure esmfold. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Systems PharmacologySystems Pharmacology Analysis - Systems pharmacology: drug targets, protein interactions, pathway enrichment, and gene expression. Use this skill for systems pharmacology tasks involving get target by name get string network interaction get functional enrichment get gene expression across cancers. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Tcga Gene ExpressionRetrieve gene expression data from TCGA (The Cancer Genome Atlas) to analyze cancer-specific expression patterns.Votes: 0GitHub stars: 390
- Text2cadUse when the user provides a natural language description of a 3D object or mechanical part and wants to generate a CAD model. Converts the description into CadQuery Python code, automatically detects or sets up the CadQuery environment, executes the script, and produces STL and STEP output files.Votes: 0GitHub stars: 390
- Thermal AnalysisThermal & Heat Transfer Analysis - Analyze thermal system: calculate heat released, convert energy units, compute potential energy, and dynamic viscosity. Use this skill for thermal engineering tasks involving calculate heat released convert energy MeV to J calculate potential energy calculate dynamic viscosity. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 390