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Claude Skills by SpectrAI-Initiative
github.com/SpectrAI-Initiative221 skills4 installs303 views
- Interproscan PipelineInterProScan Analysis Pipeline - Run InterProScan for domain analysis, then enrich with UniProt data and STRING interactions. Use this skill for functional proteomics tasks involving interproscan analyze get uniprotkb entry by accession get functional enrichment query interpro. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Kegg Gene SearchSearch KEGG database for gene information to retrieve pathway associations, functional annotations, and disease links.Votes: 0GitHub stars: 390
- Lab Protocol From LiteratureLab Protocol from Literature - Extract and generate lab protocol: search PubMed, extract protocol from paper, and generate executable protocol. Use this skill for lab science tasks involving pubmed search extract protocol from pdf protocol generation generate executable json. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Lead Compound OptimizationLead Compound Optimization - Optimize a lead compound: validate SMILES, compute drug-likeness, predict ADMET properties, and check ChEMBL bioactivity. Use this skill for medicinal chemistry tasks involving is valid smiles calculate mol drug chemistry pred molecule admet search activity. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Length MeasurementLength & Dimension Measurement - Precision length measurement: convert mm to m, calculate length plus width, area, and error. Use this skill for metrology tasks involving convert length mm to m calculate length plus width calculate area calculate absolute error. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Material Density Volume CalculationCalculate material density and volume from mass and geometric dimensions for materials mechanics analysis.Votes: 0GitHub stars: 390
- Measurement Error AnalysisAnalyze measurement errors, uncertainties, and statistical variations in experimental data for quality control.Votes: 0GitHub stars: 390
- Meta Analysis ExecutionPerform meta-analysis on scientific studies to synthesize research findings and generate comprehensive reports with statistical summaries.Votes: 0GitHub stars: 390
- Metabolomics PathwayMetabolomics Pathway Analysis - Analyze metabolomics: compound identification, KEGG pathway mapping, enzyme links, and PubChem data. Use this skill for metabolomics tasks involving search pubchem by name kegg find kegg link kegg get. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Microbiome GenomicsMicrobiome Genomics Analysis - Analyze microbial genome: NCBI genome data, taxonomy, KEGG metabolic pathways, and annotation. Use this skill for metagenomics tasks involving get genome dataset report by taxon get taxonomy kegg find get genome annotation report. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Mobility AnalysisCharge Carrier Mobility Analysis - Analyze carrier mobility: calculate new mobility, compute vacuum permittivity, and error analysis. Use this skill for semiconductor physics tasks involving calculate new mobility calculate vacuum permittivity calculate absolute error calculate mean square. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Molecular Descriptors CalculationCalculate advanced molecular descriptors including shape indices, connectivity indices, and structural features for QSAR and drug discovery.Votes: 0GitHub stars: 390
- Molecular Format ConversionConvert between molecular formats including SMILES, InChI, InChIKey, and SELFIES for cheminformatics applications.Votes: 0GitHub stars: 390
- Molecular Properties CalculationCalculate basic molecular properties from SMILES including molecular weight, formula, atom counts, and exact mass.Votes: 0GitHub stars: 390
- Molecular Property ProfilingComprehensive molecular property analysis covering basic info, hydrophobicity, H-bonding, structural complexity, topology, drug-likeness, charge distribution, and complexity metrics.Votes: 0GitHub stars: 390
- Molecular Similarity SearchSearch for similar molecules using Tanimoto similarity with Morgan fingerprints to identify structurally related compounds.Votes: 0GitHub stars: 390
- Molecular Docking PipelineMolecular Docking Pipeline - Complete docking workflow: retrieve protein structure, predict binding pockets, prepare receptor, and dock ligand. Use this skill for structural biology tasks involving retrieve protein data by pdbcode run fpocket convert pdb to pdbqt dock quick molecule docking. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Molecular Fingerprint AnalysisMolecular Fingerprint Analysis - Fingerprint analysis: topology descriptors, structure complexity, similarity calculation, and AromaticityAnalysis. Use this skill for cheminformatics tasks involving calculate mol topology calculate mol structure complexity calculate smiles similarity AromaticityAnalyzer. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Molecular Visualization SuiteMolecular Visualization Suite - Visualize molecules: convert SMILES to formats, visualize molecule, visualize protein, visualize complex. Use this skill for chemical visualization tasks involving convert smiles to format visualize molecule visualize protein visualize complex. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Mouse Model AnalysisMouse Model Disease Analysis - Analyze mouse disease models: MouseMine search, NCBI mouse gene data, Ensembl cross-species comparison, and orthologs. Use this skill for model organisms tasks involving mousemine search get gene metadata by gene name get homology symbol get gene orthologs. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Multiomics IntegrationMulti-Omics Integration - Integrate multi-omics: gene expression, protein data, pathway enrichment, and metabolic pathways. Use this skill for multi-omics tasks involving get gene expression across cancers get uniprotkb entry by accession get functional enrichment kegg get. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Multispecies Gene AnalysisMulti-Species Gene Analysis - Analyze gene across species: Ensembl homologs, NCBI orthologs, cross-species STRING similarity, and taxonomy. Use this skill for comparative genomics tasks involving get homology symbol get gene orthologs get best similarity hits between species get taxonomy. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Mutation Impact AnalysisMutation Impact Analysis - Analyze mutation impact: predict structure, predict mutations from sequence and structure, and check variant effects with Ensembl VEP. Use this skill for molecular biology tasks involving pred protein structure esmfold zero shot sequence prediction predict zero shot structure get vep hgvs. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Natural Product AnalysisNatural Product Analysis - Analyze natural products: name to SMILES, PubChem lookup, structural analysis, and KEGG natural product search. Use this skill for natural products chemistry tasks involving NameToSMILES search pubchem by name ChemicalStructureAnalyzer kegg find. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Ncbi Gene RetrievalRetrieve gene information from NCBI Gene database by gene IDs to obtain genomic details, function, and expression data.Votes: 0GitHub stars: 390
- Ncbi Gene Deep DiveNCBI Gene Deep Dive - Deep dive into NCBI gene: metadata, dataset report, product report, orthologs, and gene links. Use this skill for gene biology tasks involving get gene metadata by gene name get gene dataset report by id get gene product report by id get gene orthologs get gene links by id. Combines 5 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Nuclear PhysicsNuclear Physics Calculations - Nuclear physics: energy conversion MeV to J, calculate total power, photon rate, and error analysis. Use this skill for nuclear physics tasks involving convert energy MeV to J calculate total power calculate incident photon rate calculate absolute error. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Oceanographic Seawater PropertiesCalculate seawater thermodynamic properties using TEOS-10 standard including density, salinity, sound speed, and freezing temperature for oceanography.Votes: 0GitHub stars: 390
- One Health AnalysisOne Health Pathogen Analysis - One Health analysis: pathogen genome, cross-species gene comparison, antimicrobial drugs, and environmental context. Use this skill for one health tasks involving get genome dataset report by taxon get homology symbol get mechanism of action by drug name tavily search get taxonomy. Combines 5 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Opentargets Disease TargetRetrieve disease-associated targets from Open Targets using disease EFO IDs to identify therapeutic targets.Votes: 0GitHub stars: 390
- Optical Frequency CalculationCalculate optical frequency and wavelength relationships for photonics and electromagnetic analysis.Votes: 0GitHub stars: 390
- Optics AnalysisOptical System Analysis - Analyze optical system: calculate photon rate, frequency range, radiation pressure, and electron wavelength. Use this skill for optics tasks involving calculate incident photon rate calculate frequency range calculate radiation pressure electron wavelength. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Organism ClassificationOrganism Classification & Database - Classify organism: NCBI taxonomy, Ensembl taxonomy, ChEMBL organisms, and genome info. Use this skill for taxonomy tasks involving get taxonomy get taxonomy id get organism by id get genome dataset report by taxon. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Orphan Drug AnalysisOrphan Drug & Rare Disease Analysis - Analyze orphan drugs: Monarch disease phenotypes, OpenTargets targets, FDA drug data, and clinical studies. Use this skill for orphan drug development tasks involving get joint associated diseases by HPO ID list get associated targets by disease efoId get clinical studies info by drug name pubmed search. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Pandemic PreparednessPandemic Preparedness Analysis - Pandemic analysis: virus genome, taxonomy, drug candidates, and literature intelligence. Use this skill for public health tasks involving get virus dataset report get virus by taxon genome get mechanism of action by drug name tavily search search literature. Combines 5 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Paper Ai SearchUse when the user describes a research need in natural language and wants AI-assisted query expansion before searching for papers, including requests to find recent work on a topic, related papers in a direction, or similar Chinese requests for AI paper search.Votes: 0GitHub stars: 390
- Paper Discussion FullUse when the user wants the full multi-stage paper discussion workflow, a comprehensive structured discussion of one paper, or an equivalent full-discussion request in another language.Votes: 0GitHub stars: 390
- Paper DiscussionUse when the user wants question-driven help on one paper, including paper understanding, follow-up questions, method or experiment clarification, limitation analysis, or comparison against related work in any language.Votes: 0GitHub stars: 390
- Paper SearchUse when the user wants keyword-based academic paper discovery in Paper Study, including requests to search papers by topic, date range, or source such as arXiv, Semantic Scholar, bioRxiv, PubMed, Hugging Face daily papers, or similar Chinese requests about paper search.Votes: 0GitHub stars: 390
- Pediatric Drug SafetyPediatric Drug Safety Review - Evaluate pediatric drug safety: pediatric use info, child safety, dosage forms, and overdosage info from FDA. Use this skill for pediatric pharmacology tasks involving get pediatric use info by drug name get child safety info by drug name get dosage forms and strengths by drug name get overdosage info by drug name. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Peptide Properties CalculationCalculate peptide sequence properties including molecular weight, isoelectric point, extinction coefficient, and chemical formula.Votes: 0GitHub stars: 390
- Personalized MedicinePersonalized Medicine Report - Generate personalized medicine report: pharmacogenomics, variant effects, drug safety, and clinical pharmacology. Use this skill for precision medicine tasks involving get pharmacogenomics info by drug name get vep hgvs get adverse reactions by drug name get clinical pharmacology by drug name. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Pharmacogenomics AnalysisPharmacogenomics Analysis - Pharmacogenomics analysis: FDA pharmacogenomics info, variant effects, ClinVar pathogenicity, and gene expression. Use this skill for pharmacogenomics tasks involving get pharmacogenomics info by drug name get vep hgvs clinvar search get gene expression across cancers. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 390
- Pharmacokinetics ProfilePharmacokinetics Profile Builder - Build a PK profile: FDA pharmacokinetics, clinical pharmacology, dosage info, and molecular properties. Use this skill for pharmacology tasks involving get pharmacokinetics by drug name get clinical pharmacology by drug name get dosage and storage information by drug name get compound by name. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Phenotype By Hpo IdRetrieve phenotype information from Monarch Initiative using HPO (Human Phenotype Ontology) IDs to understand disease manifestations.Votes: 0GitHub stars: 390
- Polymer Property AnalysisPolymer & Material Property Analysis - Analyze polymer properties: composition, symmetry, density, and lattice parameters for material design. Use this skill for polymer science tasks involving MaterialCompositionAnalyzer CalculateSymmetry CalculateDensity MofLattice. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 390
- Polypharmacology AnalysisPolypharmacology Analysis - Analyze a drug's multi-target pharmacology: get targets from ChEMBL, functional enrichment from STRING, and pathway links from KEGG. Use this skill for pharmacology tasks involving get target by name get functional enrichment kegg link get mechanism by id. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 390
- Population GeneticsPopulation Genetics Analysis - Analyze population genetics: Ensembl variation populations, linkage disequilibrium, and variant frequency data. Use this skill for population genetics tasks involving get info variation populations get ld get variation get variant recoder. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 390
- Precision OncologyPrecision Oncology Workflow - Precision oncology: tumor expression profiling, variant analysis, targeted therapy lookup, and clinical trials. Use this skill for precision oncology tasks involving get gene expression across cancers get vep hgvs get associated drugs by target name get clinical studies info by drug name pubmed search. Combines 5 tools from 5 SCP server(s).Votes: 0GitHub stars: 390
- Protein Blast SearchSearch for similar protein sequences in UniProt Swiss-Prot database using BLAST to identify homologous proteins and functional relationships.Votes: 0GitHub stars: 390