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Claude Skills by stanfish06
github.com/stanfish061,787 skills13 installs1,944 views
- Wgs PrsEnd-to-end WGS to polygenic risk score pipeline. Takes paired-end FASTQ files (or a pre-existing VCF) through nf-core/sarek for variant calling, applies VCF QC (normalisation, hard filtering,Votes: 0GitHub stars: 9
- WorkflowVercel Workflow DevKit (WDK) expert guidance. Use when building durable workflows, long-running tasks, API routes or agents that need pause/resume, retries, step-based execution, or crash-safe orchestration with Vercel Workflow.Votes: 0GitHub stars: 9
- WorktrunkGuidance for Worktrunk (the `wt` CLI) — git worktree management, hooks, and config. Load when working out which worktree a `wt` command will act on, or reaching for the global `-C <path>` to target one; editing .config/wt.toml or ~/.config/worktrunk/config.toml; adding, modifying, or debugging hooks (post-merge, post-start, pre-commit, pre-merge, post-switch, etc.); configuring commit message generation or command aliases; or troubleshooting wt behavior. Also answers general worktrunk/wt ques...Votes: 0GitHub stars: 9
- Writing BeatsWriting, exploit; assemble raw material into a journey of beats, grounding each term before a beat leans on it.Votes: 0GitHub stars: 9
- Writing ShapeWriting, exploit: shape raw material into an article, paragraph by paragraph.Votes: 0GitHub stars: 9
- YeetPublish local changes to GitHub by confirming scope, committing intentionally, pushing the branch, and opening a draft PR through the GitHub app from this plugin, with `gh` used only as a fallback where connector coverage is insufficient.Votes: 0GitHub stars: 9
- Zoom Apps SdkUse when using Apps SDK.Votes: 0GitHub stars: 9
- Zoom Cobrowse SdkUse when using Cobrowse.Votes: 0GitHub stars: 9
- Zoom GeneralUse when comparing products.Votes: 0GitHub stars: 9
- Zoom OauthUse when implementing OAuth.Votes: 0GitHub stars: 9
- Zoom RtmsUse when using RTMS.Votes: 0GitHub stars: 9
- LabstepQuery and display Labstep electronic lab notebook data — experiments, protocols, resources, and inventory — viaVotes: 0GitHub stars: 9
- Phoenix EvalsBuild and run evaluators for AI/LLM applications using Phoenix.Votes: 0GitHub stars: 9
- Playwright CliAutomate browser interactions, test web pages and work with Playwright tests.Votes: 0GitHub stars: 9
- Synthetic Monitoring ChecksAuthor Grafana Cloud Synthetic Monitoring checks, with deep coverage of k6 scripted and browser checks: SM's single-VU/single-iteration execution model, assertions that actually fail probe_success (expect() and fail() vs bare check()), secrets, deterministic scripts, robust browser locators, local validation with k6 run, deployment via UI/API/Terraform, verifying probe_success, and rollback. Also helps choose the simplest sufficient check type (HTTP/ping/DNS/TCP, MultiHTTP, scripted, browser)...Votes: 0GitHub stars: 9
- Ukb Ppp Region FetchFetch a regional slice of plasma pQTL summary statistics from the UK Biobank Pharma Proteomics Project (UKB-PPP; Sun 2023 Nature) for a specific (protein, ancestry) measurement. Use when an agent needs per-variant beta / SE / p-value around a coloc-lead variant for downstream colocalisation, Mendelian randomisation, or regional plotting against a pQTL exposure. The canonical use case is the cis-window around the protein's coding gene TSS, but UKB-PPP releases full-genome summary stats per pro...Votes: 0GitHub stars: 9
- CavecrewWhen to delegate to `cavecrew-investigator` (locate code), `cavecrew-builder` (1-2 file edit) or `cavecrew-reviewer` (diff review) instead of working inline or using `Explore`. Their output is compressed, so main context lasts longer.Votes: 0GitHub stars: 9
- Databricks Ai FunctionsUse Databricks built-in AI Functions (ai_classify, ai_extract, ai_summarize, ai_mask, ai_translate, ai_fix_grammar, ai_gen, ai_analyze_sentiment, ai_similarity, ai_parse_document, ai_prep_search, ai_query, ai_forecast) to add AI capabilities directly to SQL and PySpark pipelines without managing model endpoints. Also covers document parsing and building custom RAG pipelines (parse → prep_search → index → query).Votes: 0GitHub stars: 9
- Databricks Mlflow EvaluationMLflow 3 GenAI agent evaluation. Use when writing mlflow.genai.evaluate() code, creating @scorer functions, using built-in scorers (Guidelines, Correctness, Safety, RetrievalGroundedness), building eval datasets from traces, setting up trace ingestion and production monitoring, aligning judges with MemAlign from domain expert feedback, or running optimize_prompts() with GEPA for automated prompt improvement.Votes: 0GitHub stars: 9
- Docker Agent ConfigUse this skill when creating or editing an agent.yaml (or .yml/.hcl) configuration file for Docker Agent (cagent), including defining agents, models/providers, built-in or MCP toolsets, multi-agent teams with sub_agents. Even if the user just says they want to "build an AI agent with Docker", "make a coding agent config", "add a tool to my agent", or "set up a team of agents", this skill applies. Covers agent properties (model, instruction, toolsets, sub_agents, fallback), the models/provider...Votes: 0GitHub stars: 9
- Docker Agent RunUse this skill when running a Docker Agent with `docker agent run`, choosing a safety/approval mode, using the `--sandbox` isolation flag, setting up aliases, or troubleshooting a run (missing credentials, worktrees). Even if the user just says they want to "run my agent", "make my agent auto-approve tool calls", "run this agent safely", or "why can't my agent see my API key", this skill applies. Covers `--safety` (strict/balanced/restricted/autonomous), `--yolo`, `--sandbox` and its network ...Votes: 0GitHub stars: 9
- Docker Build StrategiesUse this skill when writing, reviewing, or optimizing Dockerfiles, even if the user just says their image is too large, their build is slow, or they need to harden a container for production. Covers multi-stage builds, layer caching, .dockerignore, non-root users, and image size optimization.Votes: 0GitHub stars: 9
- Docker Compose PatternsUse this skill when creating, modifying, or debugging Docker Compose configurations, even if the user just says they need to wire services together, add a database to their stack, or set up a local development environment with multiple containers. Covers service definitions, health checks, dependency ordering, volumes, networks, environment variables, and development overrides.Votes: 0GitHub stars: 9
- Docker Project FoundationsUse this skill when setting up, initializing, or Dockerizing a project, even if the user doesn't explicitly mention Docker but describes a need for containerized local development, adding a database or cache dependency, or running services without host-level installs. Covers Dockerfile, compose.yaml, and .dockerignore creation with Docker best practices.Votes: 0GitHub stars: 9
- Infra PostgresSets up and manages Postgres using the clickhousectl CLI — runs a local Docker-backed Postgres for development, and creates and operates managed ClickHouse Cloud Postgres services (connections, TLS, runtime config, read replicas, failover, point-in-time restore). Use when the user wants a Postgres or PostgreSQL database for their application, a local Postgres dev environment, psql access, or a managed/production Postgres in ClickHouse Cloud, or mentions moving a local Postgres to production.Votes: 0GitHub stars: 9
- Protocols IoSearch, browse, and retrieve scientific protocols from protocols.io via REST API. Client token authenticationVotes: 0GitHub stars: 9
- Zz PrefixSynthetic positive control for the eval harness. Not a real skill.Votes: 0GitHub stars: 8
- Accelerator PhysicistExpert-thinking profile for Accelerator Physicist (experimental / beam physics): Reasons from beam optics, RF cavities, emittance budgets, and loss maps while treating halo and impedance-driven instabilities as first-class failure modes.Votes: 0GitHub stars: 8
- Accessibility And Inclusive VisualizationMake data visualizations accessible and inclusive. Use when the user needs chart or diagram accessibility guidance, text alternatives for complex visuals, color and contrast review, keyboard support, reduced-motion behavior for animation or parallax, or an accessibility QA workflow for exported figures, UML-like diagrams, and dashboards.Votes: 0GitHub stars: 8
- Acoustical EngineerExpert-thinking profile for Acoustical Engineer (noise control / building & environmental acoustics / NVH / standards (IEC 61672, ISO 9613-2)): Reasons from source-path-receiver control, logarithmic decibel levels, and mass-law transmission loss through IEC 61672 Class 1 metering, ISO 9613-2 propagation, SEA/FEM/BEM simulation, and ISO 9612 occupational surveys while treating flanking paths, coincidence dips, tonality penalties, and background-correction...Votes: 0GitHub stars: 8
- Acoustics PhysicistExpert-thinking profile for Acoustics Physicist (wave acoustics / ultrasonics & underwater / transducer & array / impedance tube & anechoic / standards (ISO 10534, IEC 61672)): Reasons from impedance Z=p/u, Helmholtz number kL regime, and the sonar equation SL-TL-NL+DI+PG through impedance tubes (ISO 10534), anechoic and reverberation rooms, laser vibrometry, and k-Wave/COMSOL simulation while treating edge diffraction inflating absorption above one, near-field versus far-field confusion...Votes: 0GitHub stars: 8
- Actuarial ScientistExpert-thinking profile for Actuarial Scientist (life / health / P&C / valuation / capital & accounting): Reasons from mortality tables (qx, period/cohort, select/ultimate) and Chain-Ladder/Mack reserving through GLM/GAM frequency–severity and Tweedie pricing, limited-fluctuation and Bühlhmann-Straub credibility, Solvency II SCR standard formula, and IFRS 17 CSM/RA while treating triangle truncation, overfitting, and tail...Votes: 0GitHub stars: 8
- Adaptive MetricsCut Grafana Cloud Metrics cost by shrinking active-series count with Adaptive Metrics aggregation rules — auto-recommendations from query history, custom exact/regex rules, label-drop config, unused-metric detection, and Alloy remote_write fallback. Use when investigating a high Mimir/Grafana Cloud bill, hunting high-cardinality labels (`pod_uid`, `service_instance_id`, `version`), pre-aggregating counters/gauges, dropping unused metrics, or measuring `grafanacloud_instance_active_series` bef...Votes: 0GitHub stars: 8
- AdaptyvHow to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval. Use this skill whenever the user mentions Adaptyv, Foundry API, protein binding assays, protein screening experiments, BLI/SPR assays, thermostability assays, or wants to submit protein sequences for experimental characterization. Also trigger when code imports `adaptyv`, `adaptyv_sdk`, or `FoundryClient`, or references `foundry-api-public.adaptyvbio.com`.Votes: 0GitHub stars: 8
- Adding Dbt Unit TestCreates unit test YAML definitions that mock upstream model inputs and validate expected outputs. Use when adding unit tests for a dbt model or practicing test-driven development (TDD) in dbt.Votes: 0GitHub stars: 8
- Additive Manufacturing EngineerExpert-thinking profile for Additive Manufacturing Engineer (LPBF / DED metal AM / qualification): Reasons from melt-pool physics, VED, and thermal history through LPBF vs DED process selection, build orientation anisotropy, support design, powder lot control, CT/metallography NDE, and ASTM F42 / ISO-ASTM 529xx qualification—not generic 3D printing.Votes: 0GitHub stars: 8
- AdjusttextUse the Python adjustText package to automatically move matplotlib text labels so they do not overlap each other, points, or other artists. Use for crowded scatter plots, volcano plots, PCA/UMAP labels, line-end annotations, maps, and publication figures that need readable labels with optional arrows. Pairs with matplotlib, seaborn, scanpy, and scientific-visualization workflows.Votes: 0GitHub stars: 8
- AeonUse for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.Votes: 0GitHub stars: 8
- AerodynamicistExpert-thinking profile for Aerodynamicist (wind tunnel / CFD / flight vehicle external aerodynamics): Reasons from circulation, Cp distributions, and boundary-layer physics through Re/Mach similitude, NACA airfoil polars, stall classification, wind- tunnel blockage/wall corrections, and SA/SST/LES external-aero CFD—not generic mechanical engineering.Votes: 0GitHub stars: 8
- Aeronautical EngineerExpert-thinking profile for Aeronautical Engineer (fixed-wing aircraft design / certification / flight test): Reasons from airfoil polars, drag buckets, and static margin through AVL/DATCOM stability derivatives, wind-tunnel blockage and wall corrections, FAR 25 §25.101–25.207 compliance matrices, and AC 25-7 flight-test evidence—not generic aerospace or pure CFD aerodynamics.Votes: 0GitHub stars: 8
- Aeronomy ScientistExpert-thinking profile for Aeronomy Scientist (remote sensing / MLT-thermosphere- ionosphere / ISR + resonance lidar / tides & coupling / empirical models (IRI, NRLMSIS)): Reasons from MLT lidar and ISR profiles through IRI/NRLMSIS benchmarks, treating ion-line spectra, metal-layer winds, and storm-time TEC as distinct observables.Votes: 0GitHub stars: 8
- Aerospace EngineerExpert-thinking profile for Aerospace Engineer (margin management / aero-structures- propulsion-GNC / V&V (FAR/CS, DO-178C, NASA-STD) / CFD-FEA-flight test): Reasons from margin-managed factors of safety, mass properties, and the analysis-test-similarity V&V hierarchy through FUN3D/SU2 CFD, NASTRAN/Abaqus FEA, JSBSim/Simulink 6-DOF, and FAR/CS, DO-178C, and NASA-STD compliance while treating flutter, buckling, inlet distortion, mass growth, and single-point failures as...Votes: 0GitHub stars: 8
- Agent Browser VerifyAutomated browser verification for dev servers. Triggers when a dev server starts to run a visual gut-check with agent-browser — verifies the page loads, checks for console errors, validates key UI elements, and reports pass/fail before continuing.Votes: 0GitHub stars: 8
- AgentcoreRun agent-browser on AWS Bedrock AgentCore cloud browsers. Use when the user wants to use AgentCore, run browser automation on AWS, use a cloud browser with AWS credentials, or needs a managed browser session backed by AWS infrastructure. Triggers include "use agentcore", "run on AWS", "cloud browser with AWS", "bedrock browser", "agentcore session", or any task requiring AWS-hosted browser automation.Votes: 0GitHub stars: 8
- Agentic Actions AuditorAudits GitHub Actions workflows for security vulnerabilities in AI agent integrations including Claude Code Action, Gemini CLI, OpenAI Codex, and GitHub AI Inference. Detects attack vectors where attacker-controlled input reaches AI agents running in CI/CD pipelines, including env var intermediary patterns, direct expression injection, dangerous sandbox configurations, and wildcard user allowlists. Use when reviewing workflow files that invoke AI coding agents, auditing CI/CD pipeline securit...Votes: 0GitHub stars: 8
- Agentic WorkflowsRoute gh-aw workflow design/create/debug/upgrade requests to the right prompts.Votes: 0GitHub stars: 8
- Agents SdkBuild AI agents on Cloudflare Workers using the Agents SDK. Load when creating stateful agents, durable workflows, real-time WebSocket apps, scheduled tasks, MCP servers, or chat applications. Covers Agent class, state management, callable RPC, Workflows integration, and React hooks. Biases towards retrieval from Cloudflare docs over pre-trained knowledge.Votes: 0GitHub stars: 8
- Agricultural EngineerExpert-thinking profile for Agricultural Engineer (field machinery / irrigation & drainage / postharvest storage / precision ag / ASABE standards (D497, ISO 11783)): Reasons from mass, energy, and momentum balances on variable biological media through ET-based scheduling, psychrometric grain-drying balances, ASABE D497 draft estimates, EPANET pipe networks, and RTK-GNSS/ISOBUS precision-ag validation while treating soil compaction, clogged drip emitters, grain-bin hotspots, GPS...Votes: 0GitHub stars: 8
- Agricultural EntomologistExpert-thinking profile for Agricultural Entomologist (field scouting / IPM / resistance management (IRAC MoA) / biocontrol / pollinator protection): Reasons from pest population dynamics, economic injury levels and thresholds, and degree-day phenology through systematic scouting, IRAC mode-of-action rotation, RCBD efficacy trials, and conservation biocontrol while treating misidentification, secondary pest flares from enemy removal, resistance under repeated MoA...Votes: 0GitHub stars: 8
- AgroecologistExpert-thinking profile for Agroecologist (field ecology / soil health / participatory on-farm trials / landscape GIS / agroecology transitions (FAO 10 Elements)): Reasons from socio-ecological farm systems, functional diversity, soil-biology-mediated fertility, and yield-service trade-offs through mother-baby and mixed-model trials, N/P/C mass balances, PLFA/amplicon and pollinator surveys, and NDVI/FRAGSTATS landscape analysis, while treating edge-effect and plot-size...Votes: 0GitHub stars: 8