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Claude Skills by stanfish06
github.com/stanfish061,787 skills13 installs1,944 views
- AstrostatisticianExpert-thinking profile for Astrostatistician (computational / survey & cosmology inference / time-domain): Reasons from selection functions, censored flux limits, and look-elsewhere trial factors through Cobaya/emcee/dynesty cosmology, GP-coupled exoplanet inference, Landy–Szalay clustering, photo-z σNMAD calibration, and SBI (sbi/LtU-ILI) while treating Malmquist bias, prior-driven tensions, and detrend-then- fit transit...Votes: 0GitHub stars: 8
- Atac SeqATAC-seq processing with assay QC, MACS3 peak calling, consensus peak matrices, differential accessibility, and motif or footprint follow-up.Votes: 0GitHub stars: 8
- AtherisSets up and runs Atheris, the coverage-guided Python fuzzer built on libFuzzer. Covers TestOneInput harnesses, FuzzedDataProvider, instrumenting both pure Python and native C extensions, and running under AddressSanitizer. Use when fuzzing a Python package, hunting memory corruption in a Python C extension, or choosing between Atheris and Hypothesis for a Python target.Votes: 0GitHub stars: 8
- Atmospheric ChemistExpert-thinking profile for Atmospheric Chemist (field campaigns / chamber & box modeling / gas-aerosol-multiphase chemistry / OH-NOx-VOC budgets / emissions inventories): Reasons from coupled photochemical OH-NOx-VOC radical budgets, heterogeneous aerosol uptake, and NOx-limited versus VOC-limited regimes through MCM/F0AM and GEOS-Chem/CMAQ/WRF-Chem models, OH-reactivity closure, PMF on AMS factors, HYSPLIT trajectories, and EKMA isopleths while treating chamber wall losses, instrument...Votes: 0GitHub stars: 8
- Atmospheric ScientistExpert-thinking profile for Atmospheric Scientist (dynamics-physics / obs-model synthesis / reanalysis-NWP / multiscale (synoptic-mesoscale-tropical-stratosphere)): Reasons from scale-dependent balances, Ertel PV on isentropic surfaces, and closed moisture/energy budgets through PV/omega/Q-vector diagnostics, reanalyses (ERA5, MERRA-2) and WRF/MPAS/CMIP runs, and obs validation (GRUAN sondes, IMERG, CERES), while treating reanalysis assimilation increments, retrieval biases...Votes: 0GitHub stars: 8
- Atomic Molecular Optical PhysicistExpert-thinking profile for Atomic, Molecular & Optical Physicist (experimental AMO / lasers / ultracold atoms / precision metrology): Reasons from Rabi/OBE dynamics, laser-cooling hierarchy, optical lattices and Hubbard U/J, and magic-wavelength clock budgets through NIST ASD, ARC, QuTiP/PyLCP, and in-situ lattice-depth calibration while treating power-based depth guesses, polarization impurities, BBR shifts, and imaging-heating conflation as...Votes: 0GitHub stars: 8
- Attack ChainUse for authorized multi-stage attack-path planning and orchestration when a task spans reconnaissance, initial access, privilege escalation, lateral movement, or impact assessment. Route single-stage tasks directly to their specialist skill.Votes: 0GitHub stars: 8
- Attack Path AnalysisUse when Codex is already in the attack-path-analysis phase of a security scan or the user explicitly asks to trace a security finding from source to sink and calibrate severity. Do not use as the primary trigger for full PR, commit, branch, patch, or repository scans.Votes: 0GitHub stars: 8
- AudiologistExpert-thinking profile for Audiologist (clinical audiology / diagnostic audiometry / amplification & cochlear implants / vestibular / standards (ANSI S3.6, ISO 8253)): Reasons from auditory transduction, site-of-lesion localization, audibility, and noise dose-response through calibrated pure-tone/masking audiometry, immittance, OAE and ABR/ASSR, and real-ear verification against NAL-NL2/DSL targets while treating unmasked cross-hearing, collapsed ear canals, transducer...Votes: 0GitHub stars: 8
- Authoring Github WorkflowsAuthor and review GitHub Actions workflow YAML safely so syntactically-valid YAML can't ship a workflow that GitHub Actions refuses to run. USE FOR: editing, adding, or reviewing any file under .github/workflows/, writing run-name/name/if/env/run values that contain ${{ }} expressions, diagnosing a run that fails with 'This run likely failed because of a workflow file issue' and no jobs starting, deciding when a workflow scalar must be quoted, validating workflows with actionlint. DO NOT USE ...Votes: 0GitHub stars: 8
- Automotive EngineerExpert-thinking profile for Automotive Engineer (vehicle integration / powertrain & xEV calibration / chassis dynamics & NVH / durability & fatigue / homologation & functional safety...): Reasons from vehicle-level requirements, regulatory limits, energy/exergy budgets, and distribution-based durability through DFMEA/DVP&R, DoE calibration (INCA, CANape, HIL), Pacejka tire and multibody models, rainflow fatigue, and source-path NVH analysis while treating undocumented build-level and cal-ID d...Votes: 0GitHub stars: 8
- AutoskillObserve the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use when the user asks to analyze their recent work and propose skills based on what they actually do. Requires the screenpipe daemon (https://github.com/screenpipe/screenpipe) running locally on port 3030 — the skill has no other data source and will refuse to...Votes: 0GitHub stars: 8
- Aws Agentic AiAWS Bedrock AgentCore comprehensive expert for deploying and managing AI agents at scale. Use when working with any AgentCore service including Gateway, Runtime, Memory, Identity, Code Interpreter, Browser, Observability, Agent Registry, or Evaluations. Covers agent deployment, MCP tool integration, credential management, agent discovery, governance workflows, and automated quality assessment. Essential when user mentions AgentCore, agent runtime, agent registry, agent evaluation, MCP gateway...Votes: 0GitHub stars: 8
- Aws Mcp SetupConfigure AWS MCP servers for documentation search and API access. Use when setting up AWS MCP, configuring AWS documentation tools, troubleshooting MCP connectivity, or when user mentions aws-mcp, awsdocs, uvx setup, or MCP server configuration. Covers both Full AWS MCP Server (with uvx + credentials) and lightweight Documentation MCP (no auth required).Votes: 0GitHub stars: 8
- BacteriologistExpert-thinking profile for Bacteriologist (wet-lab / clinical & environmental microbiology): Reasons from bacterial growth physiology, selective culture, Gram stain, MALDI-TOF and 16S/WGS identification, EUCAST/CLSI AST, BSL containment, contamination and VBNC, using BacDive and BV-BRC for strain metadata and pathogen genomics.Votes: 0GitHub stars: 8
- Base44 CliThe base44 CLI covers base44 projects: resource configuration (entities, backend functions, ai agents), initialization and actions (resource creation, deployment). This skill is the place for learning about how to configure resources. Read this skill when planning or implementing a feature.Votes: 0GitHub stars: 8
- Base44 SdkThe base44 SDK is the library to communicate with base44 services. In projects, you use it to communicate with remote resources (entities, backend functions, ai agents) and to write backend functions. This skill is the place for learning about available modules and types. Read this skill when planning or implementing a feature.Votes: 0GitHub stars: 8
- Base44 TroubleshooterTroubleshoot production issues using backend function logs. Use when investigating app errors, debugging function calls, or diagnosing production problems in Base44 apps.Votes: 0GitHub stars: 8
- Batch Draft WriterDrafts multiple email replies or follow-ups in batch using the Superhuman Mail MCP server — processing your inbox in bulk rather than one email at a time. Use this skill whenever someone asks to \"draft replies to my unread emails\", \"respond to all my emails\", \"write follow-ups for my meetings this week\", \"batch draft responses\", \"draft emails for all threads that need a reply\", \"auto-draft my inbox\", \"help me respond to everything\", \"write follow-up emails based on my meetings\...Votes: 0GitHub stars: 8
- Bayesian StatisticianExpert-thinking profile for Bayesian Statistician (probabilistic modeling / hierarchical inference / MCMC diagnostics / model criticism / decision theory): Reasons from Bayes' rule, coherent uncertainty, exchangeability, and partial-pooling hierarchy through Stan/PyMC HMC-NUTS fits, prior and posterior predictive checks, PSIS-LOO, and SBC calibration while treating divergent transitions and funnels, weak identifiability and label switching, improper posteriors, and...Votes: 0GitHub stars: 8
- Behavioral EcologistExpert-thinking profile for Behavioral Ecologist (field / observational / experimental behavioral ecology): Reasons from versioned ethograms, Altmann focal/scan sampling, and activity budgets; scores with BORIS (Cohen’s κ), analyzes sequences with Markov/HMM tools, runs sham-controlled playbacks under ARRIVE 2.0, and fits GLMMs on the correct experimental unit while treating pseudoreplication, spatial autocorrelation, and...Votes: 0GitHub stars: 8
- Behavioral NeuroscientistExpert-thinking profile for Behavioral Neuroscientist (in vivo behavior / learning & memory paradigms / operant & maze assays / pose-tracking ethology / IACUC (ARRIVE 2.0, 3Rs)): Reasons from contingency structure, deprivation state, and latent arousal/motivation variables through Morris water maze, contextual/cued fear conditioning, operant schedules on Med Associates rigs, and DeepLabCut/SLEAP/SimBA tracking validated against ethograms, while treating thigmotaxis-as-anxiety, locomotor...Votes: 0GitHub stars: 8
- Benchling IntegrationBenchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Use when automating lab data with benchling-sdk or the v2 API.Votes: 0GitHub stars: 8
- Benchmark Paper TemplateStructures Benchmark and Evaluation papers using the five-pillar framework (Research Gap, Construction Pipeline, Evaluation Framework, Empirical Findings, optional Companion Method). Returns a completeness audit, a six-part Introduction logic chain, a Section 2-7 skeleton, and a pre-submission checklist. Use when writing a benchmark paper, structuring a benchmark paper, checking whether a benchmark idea is substantive, drafting a benchmark Introduction, or planning the data-construction pipel...Votes: 0GitHub stars: 8
- BeylaAuto-instrument an application's HTTP / gRPC / DB traffic with Grafana Beyla eBPF — no code changes, no SDK, no restart. Covers requirements (Linux 5.8+ with BTF, CAP_SYS_ADMIN, host PID), language matrix (Go / Java / Python / Ruby / Node / .NET / Rust / C++ / PHP), Docker + Helm + DaemonSet install, port- / process- / Kubernetes-metadata discovery, OTLP traces + Prometheus metrics export, routes decorator (cardinality control), trace sampling, and Grafana Cloud via Alloy. Use when adding obs...Votes: 0GitHub stars: 8
- BidsUse this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars, or creating BIDS derivatives.Votes: 0GitHub stars: 8
- Binary Diff跨版本符号迁移与二进制差分。当你有旧版本的符号/逆向结果，需要快速迁移到新版本时使用。 适用场景：内核缺 PDB 用旧版符号推导、程序更新后批量迁移函数名、应用更新后快速定位新偏移。 核心方法：用 LLM 做结构化差异比对，程序化输入输出，成本极低（200 函数 ~1 元）。 触发关键词：符号迁移、bindiff、跨版本、PDB 缺失、函数偏移迁移、symbol migration、binary diff、版本对比。Votes: 0GitHub stars: 8
- Bindingdb SkillSubmit compact BindingDB REST API requests for ligand-target binding lookups by PDB, UniProt, or similarity search. Use when a user wants concise BindingDB summaries; save raw payloads only on request.Votes: 0GitHub stars: 8
- Binlog Failure AnalysisAnalyze MSBuild binary logs to diagnose build failures. USE FOR: build errors that are unclear from console output, diagnosing cascading failures across multi-project builds, tracing MSBuild target execution order, and generally any MSBuild build issues. Requires an existing .binlog file. DO NOT USE FOR: generating binlogs (use binlog-generation), non-MSBuild build systems.Votes: 0GitHub stars: 8
- Bio Analysis SystemStep 5 of the bio-manuscript pipeline: design the analysis-method system. Use when planning which analyses, tools, and biological validations support each figure and task, mapping analyses to BioClaw-compatible tools or fallbacks, and connecting analyses to figure panels.Votes: 0GitHub stars: 8
- Bio Dataset SearchStep 3 of the bio-manuscript pipeline: find and match public datasets to manuscript tasks. Use when extracting datasets from related papers or searching repositories (e.g. GEO), normalizing dataset metadata, and mapping datasets to the task system.Votes: 0GitHub stars: 8
- Bio Figure DesignStep 6 of the bio-manuscript pipeline: design manuscript figures panel by panel. Use when planning figure logic, panel content, supplementary figures, and draft captions, keeping figure logic synchronized with manuscript claims.Votes: 0GitHub stars: 8
- Bio Human FeedbackPhase 2.6 of the bio-manuscript pipeline: human review checkpoint. Use when presenting a refined proposal to a human reviewer, collecting explicit feedback, recording approval or requested changes, and routing the workflow back to the correct phase.Votes: 0GitHub stars: 8
- Bio Innovation CheckStep 1 of the bio-manuscript pipeline: assess research-idea novelty. Use when expanding a topic into variants/synonyms, searching PubMed/bioRxiv/arXiv q-bio, de-duplicating related papers, assigning a novelty level, and suggesting how to sharpen or reposition the idea.Votes: 0GitHub stars: 8
- Bio Manuscript PipelineEnd-to-end bio-manuscript planning pipeline orchestrator: turn structured research input into a full manuscript plan. Use to run the multi-step workflow (innovation check, task/dataset/metric/analysis design, figure design, drafting, refinement) phase by phase using the sibling bio-* skills and bio-manuscript-common templates.Votes: 0GitHub stars: 8
- Bio Manuscript RefineRefinement loop for the bio-manuscript pipeline: three-reviewer iterative optimization (editor, computational, biological). Use when reviewing a manuscript plan, producing structured review comments, revising round by round, and tracking score and revision history toward a target journal.Votes: 0GitHub stars: 8
- Bio Manuscript TextStep 7 of the bio-manuscript pipeline: draft the main manuscript text. Use when writing the Introduction, Results (around the figure logic), Discussion, and a Methods skeleton from the figure plan, metric system, and analysis system.Votes: 0GitHub stars: 8
- Bio Metric SystemStep 4 of the bio-manuscript pipeline: design the evaluation-metric system. Use when extracting quantitative and qualitative metrics from literature or adjacent fields, organizing them into groups, and explaining what each metric measures and how to compute it.Votes: 0GitHub stars: 8
- Bio OrchestratorMeta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysisVotes: 0GitHub stars: 8
- Bio Ppt GenerateGenerate a presentation package from a finalized bio-manuscript proposal. Use when producing a 10-15 slide, Markdown-first presentation outline (group-meeting / 组会 style) from FINAL_PROPOSAL.md plus demo or validation results.Votes: 0GitHub stars: 8
- Bio Task SystemStep 2 of the bio-manuscript pipeline: design the task system. Use when identifying the dominant task taxonomy in a field and organizing it into a staged Level 1-4 difficulty ladder to prepare for downstream dataset and metric design.Votes: 0GitHub stars: 8
- Bio ToolsBiology research tools reference. Always available inside agent containers.Votes: 0GitHub stars: 8
- Biobankjapan Phewas SkillFetch compact BioBank Japan PheWAS summaries for single variants by accepting rsID, GRCh38, or GRCh37 input and resolving to the required GRCh37 query. Use when a user wants concise BBJ association results for one variantVotes: 0GitHub stars: 8
- BiochemistExpert-thinking profile for Biochemist (wet-lab / biophysical characterization / metabolism): Reasons from thermodynamics, enzyme mechanisms, and binding energetics; designs orthogonal purification and assay readouts while controlling oxidation, aggregation, coupled assays, and activity-vs-abundance confounds.Votes: 0GitHub stars: 8
- BiogeochemistExpert-thinking profile for Biogeochemist (field / lab / soil-sediment biogeochemistry / process modeling): Reasons from coupled C/N/P/S redox cycles through TEAP zonation, porewater Rhizon-peeper sampling, δ13C/δ15N/δ34S tracers, chamber and eddy-covariance fluxes, and Century/DayCent SOM modeling while treating porewater O2 contamination and nitrification-denitrification coupling errors as first-class failure modes.Votes: 0GitHub stars: 8
- BiogeographerExpert-thinking profile for Biogeographer (field / GIS / phylogenetics / spatial modeling): Reasons from Wallace's ecological vs historical split through GBIF occurrence curation, blockCV spatial cross-validation, MaxEnt/biomod2 SDMs with MESS extrapolation flags, BioGeoBEARS vicariance/dispersal tests, and phylogeographic coalescence while treating random-CV AUC inflation, background bias, and...Votes: 0GitHub stars: 8
- BioinformaticianExpert-thinking profile for Bioinformatician (dry-lab / computational genomics): Reference-build discipline (GRCh38/GENCODE/Ensembl, MANE), batch-as-covariate DE (DESeq2/edgeR), index hopping/UDI, GATK/BQSR/PLINK GWAS multiplicity, nf-core reproducibility, and scRNA-seq ambient-RNA/doublet artifacts.Votes: 0GitHub stars: 8
- Bioinformatics EngineerExpert-thinking profile for Bioinformatics Engineer (dry-lab / pipeline engineering / production genomics): Builds production genomics DAGs in Nextflow/nf-core, Snakemake, and WDL/Cromwell with digest-pinned containers, GIAB regression CI (nf-test, pytest), QC-gated MultiQC runbooks, and CLIA-grade provenance—distinct from analyst-focused bioinformatician DE/GWAS reasoning.Votes: 0GitHub stars: 8
- Biological OceanographerExpert-thinking profile for Biological Oceanographer (sea-going / plankton ecology / production & export rates / omics + microscopy / fisheries oceanography): Reasons from light-nutrient-grazing coupling, the microbial loop, and size-structured export through CTD/MOCNESS sampling, 14C and O2/Ar production with 234Th export flux, imaging and flow cytometry enumeration, and SILVA/PR2 metabarcoding while treating spatial patchiness, diel-migration tow aliasing, CDOM-biased...Votes: 0GitHub stars: 8
- Biomaterials ScientistExpert-thinking profile for Biomaterials Scientist (device R&D / implants, scaffolds, drug delivery / biocompatibility (ISO 10993) / degradation & leachables / regulatory (510(k), PMA, ISO...): Reasons from material-biology interfaces, degradation-product toxicity, and mechanical mismatch to host tissue through ISO 10993 biological evaluation plans, ISO 10993-12 extract conditions, GPC/ICP/SEM characterization, and sterilization validation while treating endotoxin contamination, pH shift from...Votes: 0GitHub stars: 8